Sequence
atgc intronic sequence ATGC exonic sequenceCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGTTGTAAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCCGAGgtgaggagagatgatatttgttattattggtagtttaataaagacctctttcttaagtgaaatatggctaaaaatttaattgttgaaaaatcttgccaattcag
Basic information
species | Glycine max |
transcript | GLYMA04G30350.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 9
CGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGTTGTAAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCCGAGgtgaggagagatgatatttg----ttattattggtagtttaataaagacctctttcttaagtgaaatatggctaaaaatttaattgttgaaaaatcttgccaattcag
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AGAAGTTGACTATGTCCAGACTATCAAAGAGGAATATGAAAAGGTAATCAAGCTTCAGGAAGAACTTGGGATTGATGTATTGGTGCATGGGGAGGCAGAGgtgggaatataccttaacctaggtttattattcaaactatttcatttttacccccctgatatgacatagtcctgcag-------------------------------
upper sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 5'ss of exon 9
CGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGTTGTAAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCCGAGgtgaggagagatgatatttgt-tattattggta----gtttaataaagacctctttcttaagtgaaatatggctaaaa--atttaattgttga-----aaaatcttgccaattcag
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TGAAGATGACTATGTCAAGGCCATCAAGGATGAAATCAACAAAGTTGTTGTTCTCCAGGAAGAGCTTGATATTGATGTTTTGGTACATGGAGAGCCAGAGgtgatttctcttcctaattatctaaaattaattcaatgcttcatggctatat-tttgttatgggaaagaaggtttaaataatttcattgtaatttgtcaatggcttgatgatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16348382|gb|BI973977.1|BI973977EST: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCCGAG AGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCATTT
genomic: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCCGAGgtgaggagag ... gccaattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGTTGTAAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCCGAGgtgaggagagatgatatttgttattattggtagtttaataaagacctctttcttaagtgaaatatggctaaaaatttaattgttgaaaaatcttgccaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA