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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttattattgtctcaaatagtcatttgagtactaatggtaagtcaaaaatatgattcttatgagattttttgttacag

Basic information

species Glycine max
transcript GLYMA04G09070.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09070.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g54100.2 (Oryza sativa), 5'ss of exon 8
TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttatt-attgtctcaaatagtcatttgagtactaatggtaagtcaaaaatatgattcttatgagattttttgttacag
 ||||| || ||||  |||||  | || ||||| ||||||||||| |||||||| || || |||||||| |||||  | |||||||||||||| |||||||| |||    |   | |  | ||  || | | || || ||| || | | || | | |  |      | | |   | |||
ACATCTAGGGAGAATCGGTAGCCGAAGGGATGATTTAGAATCTCTAGCTTACACACTAGTTTTTCTTCTACGGGGGCGTCTACCTTGGCAAGGTTATCAGgtaattcgccggacccaccattccatttatt-ctgattgta-gtaatacatttaaataattgatagtgtgtgcctgcag

upper sequence: GLYMA04G09070.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G095634_T01 (Zea mays), 5'ss of exon 2
TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttat-tattgtctcaaatagtcatttg-agtactaatggtaagtcaaaaatatgattcttatgagattttttgttacag
 |||||||| ||||||||||| ||||| ||||| ||||||||||| || || || || ||||||||||| || ||  | |||||||||||||| |||||||| |  ||| |  ||    || || ||| | |  |    || |   | |  | |  ||  | |    |||     || ||
ACATCTTGGGAGAACAGGTAGCAGGAGGGATGATTTAGAATCTCTAGCATATACACTAGTCTTTCTTCTACGAGGATGTCTACCTTGGCAAGGTTATCAGgtaaaatataggatcctccagccacttgtattgatttgagtgatgtatatgtgtacttgatgtttattttgcatctatag

upper sequence: GLYMA04G09070.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 9
TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttattattgtctcaaatagtca--tttgagtactaatggtaagtcaaaaatatgattcttatgagattttttgttacag
|||| | || ||||| || || ||||| |||||| | ||||||||||| ||||| ||||| |||||||| || ||| | || |||||||||||||| ||||| |   ||||  |||      |  |||    | || || |    |   | |   ||| | |  | | |  || |     
TCATTTGGGGAGAACTGGAAGCAGGAGGGATGACCTTGAATCTCTTGCCTACACACTTGTATTTCTTCTGCGTGGTCGCCTTCCTTGGCAAGGATACCAGgtgaactttgttacaacctccaaattttcttaattactgatccccccttactcaaattttcagcaaaatgattttag---

upper sequence: GLYMA04G09070.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G158177_T01 (Zea mays), 5'ss of exon 2
TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttattattgtc--tcaaatagtcat-ttgagtactaatggtaagtcaaaa-----atatgattcttatgagattttttgt-tacag----------------------
|||  | || ||||| || ||||||||||||||  | ||||| ||||| ||||| ||| | |||||||| || ||  | || |||||||||||||| ||||||| | | ||   |    | ||||  || | |  || |  ||  |          |||| | |      ||||| ||||| |                          
TCACTTGGGAAGAACTGGGAGTAGGAGAGATGATCTTGAATCCCTTGCATACACGCTTATTTTTCTTCTACGTGGCCGCCTCCCTTGGCAAGGATACCAGgttagtttagttgatgttctggtcacctttattcttactcctacttttttgtttttatataaatgcccatagattgtttgtatgttatttcactcttcaatcaatttag

upper sequence: GLYMA04G09070.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 5'ss of exon 9
TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttattattgtctcaaatagtcatttgagtactaatggtaagtcaaaaatatgattctta--tgagattttttgttacag----
                 | ||| |||| |||||| | ||||||||||||||||||||||| || |||||||| ||  |||| || |||||||| || ||||||           |  || |  ||| | | |   ||| || |          ||  |||  |  |  | |||||||  |    
---------------TTGCAGTCGGAGGGATGACCTGGAATCTCTTGCTTACACTCTTGTTTTCCTTCTTCGAGGCCGGCTTCCATGGCAAGGGTACCAGGTTGGGGACACTAAAgttatttgttttatttcc--tggcaactttccttgtcaatcattaacttggtctatttgttagggagag

upper sequence: GLYMA04G09070.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G25760.1 (Arabidopsis thaliana), 5'ss of exon 9
TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttattattgtctcaaatagtcatttgagtactaatggtaagtcaaaaatatgattctta--tgagattttttgttacag
||||||||| |||||  | ||| |||| |||||| | ||||||||||||||||||||||| || |||||||| ||  |||| || |||||||| || ||||||           |  || |  ||| | | |   ||| || |          ||  |||  |  |  | |||||||   
TCATCTTGGCAGAACTTGCAGTCGGAGGGATGACCTGGAATCTCTTGCTTACACTCTTGTTTTCCTTCTTCGAGGCCGGCTTCCATGGCAAGGGTACCAGgttggggacactaaagttatttgttttatttcc--tggcaactttccttgtcaatcattaacttggtctatttgttag--

upper sequence: GLYMA04G09070.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 9
TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttattattgtctcaaatagtcatttgagtactaatggtaagtcaaaaatatgattcttatgagattt-tttgttacag---------------------------------------------------
|||| | || ||||| || |||||||||||||| || ||||||||||||||||||||| | || || || || ||| | |||||||||||||| |||||||||       | || ||    |  |  | |        |   |  ||  |    |||  || | |||| ||  ||                                                       
TCATTTGGGGAGAACTGGCAGTAGGAGAGATGATTTGGAATCTCTTGCTTACACTCTTATTTTCCTCCTCCGTGGTCGTCTACCTTGGCAAGGTTATCAGgttggctccat-tcgaagttccgataaaatttgttccttctcttcaatttgaagttccgataaaatttgttccttgtcttcctttcaagtttttgacttgatttttttgttcttaaaatcccatatatag

upper sequence: GLYMA04G09070.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 9
TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttattattgtctc---aaatagtcatttgagtactaatggtaagtcaaaaatatga---ttcttatgagattttttgttacag---------------------------------------------------------------------------------------------
 ||| | || || || || |||||||| || ||||| ||||| || ||||||||| | || || ||||| |||||| | || ||||||||||| ||||||||  | |||  ||       ||||   |   |    | || | | |   |||| |     |||||   | ||      |  ||                                                                                              
ACATTTGGGAAGGACTGGGAGTAGGAGGGACGACTTGGAATCACTGGCTTACACTTTGGTATTCCTTCTGCGGGGTCGTCTTCCTTGGCAAGGTTATCAGgtactgattaactttgtggctagtagctaacgaggaagtgatcaatgtgaaatttttcttttcttcccacatcccacatcccactttttttgtattttgtttgttttgttttgttttgttttttctttttcctctcactatttttcatttggacgtgctatatatttggttttgtag

upper sequence: GLYMA04G09070.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ38433 (Selaginella moellendorffii), 5'ss of exon 7
TCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTAGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGGGGTAGGCTACCTTGGCAAGGATATCAGgttattattgtctcaaatagtcatttgagtactaatggtaagtcaaaaatatg-attcttatgagattttttgttacag
 ||| | ||| | || || |||||  |||||||  | ||||||||||  ||||| || || ||||| ||||| ||| |||| |||||||||||||| ||||| |    ||| | ||             || || |  || ||   | ||  |   | ||||                 
ACATTTGGGTCGTACTGGCAGTAGACGAGATGATCTGGAATCTCTTGGATACACGCTGGTGTTTCTCCTTCGTGGTCGGCTTCCTTGGCAAGGATACCAGgtcag-gctgttttaat-----------atattagttttatgttttacatgggcgcttttatag---------------