1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagtcttttaagctagttacttttgaaatttagaatgttactagttactgattgctagtaatcattttgctag
species | Glycine max |
transcript | GLYMA04G05910.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT GAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAAEST: gi|208328618|gb|GE130826.1|GE130826
genomic: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagtcttt ... attttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
EST: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT GAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAAEST: gi|193306549|gb|FK269703.1|FK269703
genomic: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagtcttt ... attttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
EST: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT GAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAAEST: gi|208238277|gb|GE039925.1|GE039925
genomic: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagtcttt ... attttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
EST: CTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT GAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAAEST: gi|193374951|gb|FK339889.1|FK339889
genomic: CTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagtcttt ... attttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
EST: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTT GAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAAEST: gi|193438022|gb|FK403147.1|FK403147
genomic: ATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagtcttt ... attttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
EST: TTGGTTCTATTCCTTCTTCCATTGGTGACTTTGGAACATCTTCTGAAGTT GAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
genomic: TTGGTTCTATTCCTTCTTCCATTGGTGAC-TTGGAACATCTTCTGAAGTTgtgagtcttt ... attttgctagGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTgtgagtcttttaagctagttacttttgaaatttagaatgttactagttactgattgctagtaatcattttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG