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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacacctaaacttggcattttgtacttttccttgatatattcgtgtactttgtatgttgctttatattttgaccatcaaattttttagtttcttt...

Basic information

species Glycine max
transcript GLYMA03G42370.4
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaaga-acacctaaacttggcattttgtacttttccttgatatattcgtgtactttgtatgttgctttatattttga----ccatcaaattttttagtttcttt---
|||||||| || |||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| || || ||||| | ||   |      ||||  ||||  || |      |  |||  ||   ||||  ||||  |||   || |         ||| ||| |||     | ||   
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatacttatctgaagggcacgttgtctttgtatactctccattgatg-gttttggctgttattttgggttcttggtttttctcatattctttttccacattcag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacacctaaacttggcattttgtacttttccttgatatattcgtg--tactttgtatgttgctttatattttgaccatcaaattttttagtttcttt
|| || || |||||||| |||||||| ||||| |||||||||||||| ||  | || ||||| || ||  |  |||| ||  | |||||||| || |||||||||  | | |     |  |  |   |  |||||  |  | | |  ||    |   | |   |||||| |   |||                         
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCGCGCTTATGCCCAAACTCGACCGgtaagttctcgtgcttata-cggtagatggttttctctcctctctcggtaaccaagctttggtttgcttgaatctttag-----------------------

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacacctaaacttggcattttgtacttttccttgatatattcgtg--tactttgtatgttgctttatattttgaccatcaaattttttagtttcttt
|| || || |||||||| |||||||| ||||| |||||||||||||| ||  | || ||||| || ||  |  |||||||  | |||||||| || |||||||||  | | |     |  |  |   |  |||||  |  | | |  ||    ||  | |   |||||| |   |||                         
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCTCGCTTATGCCCAAACTCGACCGgtaagttctcgtgcttata-cggtagatggttttctctcctctctcggtaaccacgctttggtttgcttgaatctttag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718785|gb|BW671986.1|BW671986
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|214009507|gb|DB988648.1|DB988648
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|17020809|gb|BM091843.1|BM091843
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|209718786|gb|BW671987.1|BW671987
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|5770628|gb|AI973802.1|AI973802
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGCATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|13482113|gb|BG511456.1|BG511456
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|213600067|gb|DB976026.1|DB976026
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|21595741|gb|BQ610584.1|BQ610584
EST:     CTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: CTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|209702900|gb|BW667435.1|BW667435
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|214007120|gb|DB986168.1|DB986168
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|208066660|gb|GD866417.1|GD866417
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|193429086|gb|FK396344.1|FK396344
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|193350834|gb|FK314156.1|FK314156
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG                         GAGCCGATATAAGGAGCGTTTGCA
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCA
EST: gi|193386094|gb|FK352408.1|FK352408
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|193358738|gb|FK328416.1|FK328416
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|213593731|gb|DB971753.1|DB971753
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|214007458|gb|DB987315.1|DB987315
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|208164325|gb|GD961893.1|GD961893
EST:     TTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: TTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: gi|213611119|gb|DB974993.1|DB974993
EST:     AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCG                         GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG