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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTCGCCAGCACCCCAGCATTTAGTCATGTTTATAGTGGCGGGAGAGACTTTTCAgtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaacctcatcttctaatgccgtattcttttataccttaag

Basic information

species Glycine max
transcript GLYMA03G40440.4
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40440.4 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 5'ss of exon 9
GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTCGCCAGCACCCCAGCATTTAGTCATGTTTATAGTGGCGGGAGAGACTTTTCAgtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaacctcatcttctaatgccgtattcttttataccttaag
| ||||| | ||||||||||| || ||||| ||||| || ||||| || || ||||| ||  | |||||||||||||||||||| || |||||    || |||||| ||   |      |||  |  |||  || |   || |||| | | | ||  | |||    || | |   ||   |                                                               
GCGATGTATTCATTCTTATGCTGTGCATACTGATTCAGTCTGGGCGCTTGCAAGCACTCCTTCGTTTAGTCATGTTTATAGTGGTGGAAGAGATCAGTCGgtgagtcaagtttc-----aaatgttgcat--aattgc-ttcttttctgaattctgaaccttcctgttttcttggatggcag--------------------------------------------------------------

upper sequence: GLYMA03G40440.4 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G167999_T02 (Zea mays), 5'ss of exon 9
GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTCGCCAGCACCCCAGCATTTAGTCATGTTTATAGTGGCGGGAGAGACTTTTCAgtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaacctcatcttctaatgccgtattcttttataccttaag
| | ||||| ||||||||||| || ||||| ||||||||||||||||| || ||||| || |||||| ||||||| || ||||| || |||||    || |||||| |||   |||  |  |  ||  ||  ||   |   | |   |  |     | | |||||||| | ||     ||  |   | |||| |                                                  
GCGTTGTGTTCATTCTTATGCTGTGCATACTGATTCTGTTTGGGCACTTGCAAGCACTCCTGCATTTGGTCATGTCTACAGTGGTGGAAGAGATCAATCTgtgagttaaattatcttgtgta--tattattgaatagtcactgtacttcgt-----cgttttgaacttttatg----tattccctgtgttccag--------------------------------------------------

upper sequence: GLYMA03G40440.4 (Glycine max), 5'ss of exon 9
lower sequence: AT3G05090.1 (Arabidopsis thaliana), 5'ss of exon 9
GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTCGCCAGCACCCCAGCATTTAGTCATGTTTATAGTGGCGGGAGAGACTTTTCAgtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaacctcatcttctaatgccgtattcttttataccttaag
| ||||| | ||| | ||||| || |||||||||||||||||||| || ||  ||| |||| ||||||||||||||||||| || || ||||||   |  ||||||  |  |        ||| |    ||   || |  |||| |   |       | ||    ||| | | |  |||| | ||  ||   | |    |                                            
GCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTATAGCGGTGGAAGAGACCAATGTgtgagtagacacc-------aaacttgtttctttctttggttttcttccagcgtataacctc---cttttttaatttcatttatctgttatgtttccgtcag------------------------------------------

upper sequence: GLYMA03G40440.4 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 9
GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTCGCCAGCACCCCAGCATTTAGTCATGTTTATAGTGGCGGGAGAGACTTTTCAgtgagtgaaaccttctattaaaatt-aac--atcaaactatatttttttattattactacatcttgaacttatgt---------gacatcatatctccttttcctgtttaacttgtgaacctcatcttctaatgccgtattcttttataccttaag---------------------------------------
|||||| |||||||| ||||| || |||||||||||||| |||||||| || ||||||||| ||||||| |||||||||||||| ||||| ||| |||| ||||||  |   ||||   | || | |||  ||  || |||     |   |  ||  ||  | |||   |||| |           |||   || |  | | ||| |||   || |  | |||    |||    |  |  |  | | |  ||  |                                        
GAGATGCGTGCATTCCTATGCCGTGCATACAGATTCTGTCTGGGCACTTGCAAGCACCCCAACATTTAGCCATGTTTATAGTGGTGGGAGGGACCTTTCCgtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcag

upper sequence: GLYMA03G40440.4 (Glycine max), 5'ss of exon 9
lower sequence: PP1S69_10V6.1 (Physcomitrella patens), 5'ss of exon 9
GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTCGCCAGCACCCCAGCATTTAGTCATGTTTATAGTGGCGGGAGAGACTTTTCAgtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaac-ctcatcttctaatgccgtattcttttataccttaag
  | ||  | ||||||||||||||||||||||||||||| ||||| || || ||||| ||  | || ||||| || |||||||||||  | |||||||| ||  ||      | |||  ||      | | |     |||||       ||| |      || || ||  |   |||  ||  |  ||  | |    | |||   ||  | |||                               
ACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTATAGTGGCGGTCGTGACTTTTCTgtacgt------tcctacaaaggcctcctttag----tatttcgcag--atttcagtgctttcaaattgcg-atcat--tacttttttagcatcaccaccttacaaatgcccatg------------------------------

upper sequence: GLYMA03G40440.4 (Glycine max), 5'ss of exon 9
lower sequence: PP1S28_153V6.1 (Physcomitrella patens), 5'ss of exon 7
---GAGATGTGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTCGCCAGCACCCCAGCATTTAGTCATGTTTATAGTGGCGGGAGAGACTTTTCAgtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaacctcatcttctaatgccgtattcttttataccttaag
     | ||  | ||||||||||| ||||| |  |||||||||||||| || || ||||| ||| |||| |||||||| ||||||||  |    ||||| || || |||       ||| | ||     || | |  ||   |||   | ||   | | | | || |  |||     ||  || |  || | |  |   ||  |||  ||   ||                                
ACAACGTTGCATTCATTCTTATGCGGTTCACATTGATTCTGTTTGGGCCCTTGCAAGCACGCCATCATTCAGTCATGTGTATAGTGGTCGC---GACTTCTCTgtaagt-------tctttaaaggactacttaatgct---tttggctgttggcagttc-tgttcacgttaatcatcacaatttacccatcttgtaaata-tttgataattaca--------------------------------