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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAATTAGCTCGGTCCACAGATGATTTCAATGCAGCACAACTTAAAGCTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttcttctagatatgcaacaactaaataattaaaatatcatgactaatctagctttaaattactggattgtcatttctgtttggatctttcttt...

Basic information

species Glycine max
transcript GLYMA03G39500.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 9
TGAAGAATTAGCTCGGTCCACAGATGATTTCAATGCAGCACAACTTAAAGCTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttcttctagatatgcaacaactaaataattaaaatatcatgactaatctagctttaaattactggattgtcatttctgtttggatctttcttt
||||||  | |||||||| || ||||||||||||| ||| ||||| ||||| || |||||||| || || ||| | ||||| ||||| |||||||||||||| ||| |        ||||    |  || | |  ||  ||  | | ||      |    |  |      | | ||  |  | ||| || |         
TGAAGAGCTTGCTCGGTCAACGGATGATTTCAATGGAGCTCAACTCAAAGCAGTGTGTGTTGAAGCGGGTATGCTTGCCCTGCGCCGGGATGCAACTGAGgtatgcat--------atatctttcgtcttagtggttgtaactttaggatgtggatgatatggag-----gaaatggtaaatgtgtgtgcag--------

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 9
TGAAGAATTAGCTCGGTCCACAGATGATTTCAATGCAGCACAACTTAAAGCTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttcttctagatatgcaacaactaaataattaaaatatcatgacta---atctagctttaaattactggattgtcatttctgtttggatctttcttt------
||| ||  | || || || |||||||||||||||| ||| || || ||||| || ||||| ||||| |||||||| || |||||||||||||| || |||||            | | |   |||  || ||| |||  |   | |||| |    |  | | | |   ||    | | |   | ||||||    | ||| | |      
TGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAGCTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATGTTAGCTCTTCGCCGTGATGCCACAGAGgtaaa---------aaagacagaact-cttaatgatttgagctttatgattgtgtagtttggtctgttttttaaggtggggttctctgttgttgtgtttgtgtgttcag

upper sequence: GLYMA03G39500.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 9
TGAAGAATTAGCTCGGTCCACAGATGATTTCAATGCAGCACAACTTAAAGCTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttcttctagatatgcaacaactaaataattaaaatatcatgactaatctagctttaaattactggattgtcatttc-tgtttggatctttcttt---
||||||| | ||||| |||||||||||||||||||  |||||||| |||||||| ||||| ||||| || ||| |||| ||||| |||||||||||||||||   || ||| |||      |  |  |||      |      || ||  |   ||   |  || |  || |   | ||   | | |||  | |    ||    
TGAAGAACTGGCTCGATCCACAGATGATTTCAATGGGGCACAACTGAAAGCTGTTTGTGTAGAGGCGGGAATGCTGGCTCTTCGTCGTGATGCAACTGAGgtactctctct-ctaccccacctcctcctacccctct---ccctcgtgcatgtgctgaatgaaactagcttgccagccaccccatctttttaacagatttgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208244769|gb|GE037494.1|GE037494
EST:     ATGTTGGCCCTTCGCCGTGATGCAACTGAG                         GTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
genomic: ATGTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttc ... ccaattgcagGTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
EST: gi|9984894|gb|BE659002.1|BE659002
EST:     CTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAG                         GTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
genomic: CTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttc ... ccaattgcagGTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
EST: gi|7030457|gb|AW460240.1|AW460240
EST:     CTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAG                         GTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
genomic: CTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttc ... ccaattgcagGTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
EST: gi|193410672|gb|FK376323.1|FK376323
EST:     TTGGCCCTTCGCCGTGATGCAACTGAG                         GTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
genomic: TTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttc ... ccaattgcagGTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
EST: gi|209727654|gb|BW663794.1|BW663794
EST:     CTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAG                         GTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
genomic: CTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttc ... ccaattgcagGTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
EST: gi|209718166|gb|BW657812.1|BW657812
EST:     CTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAG                         GTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
genomic: CTGTCTGTGTTGAGGCTGGCATGTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttc ... ccaattgcagGTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
EST: gi|208096116|gb|GD895058.1|GD895058
EST:     GTTGGCCCTTCGCCGTGATGCAACTGAG                         GTGAACCATGAGGACCTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG
genomic: GTTGGCCCTTCGCCGTGATGCAACTGAGgtttgctttc ... ccaattgcagGTGAACCATGAGGACTTTAATGAAGGCATCATCCAAGTCCAAGCAAAGAAG