Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGGTGAAGGAGTTTGTGAGTGCTGACAGTAATGAGAAGAAGGCAGTATATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacggttttatggttctgttatgttatggtttgcttaggttttattttgaattgtgttgtgaggccctaactgtttacccacatgtttatcttcaatatataaatatttatttgtatgattttctgatatgtcctttttgtttgtaccag

Basic information

species Glycine max
transcript GLYMA03G39130.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6845919|gb|AW348209.1|AW348209
EST:     TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG                         ACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
EST: gi|192297310|gb|FG992404.1|FG992404
EST:     TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCGGCCAG                         ACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
EST: gi|193366228|gb|FK333645.1|FK333645
EST:     TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG                         ACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
EST: gi|308098193|gb|HO761364.1|HO761364
EST:     TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG                         ACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGCATAGAAAAAGGTGC
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
EST: gi|17020695|gb|BM091729.1|BM091729
EST:     TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG                         ACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
EST: gi|17021210|gb|BM092244.1|BM092244
EST:     TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG                         ACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
EST: gi|58023280|gb|CX710021.1|CX710021
EST:     TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG                         ACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTTGGTGAAGGAGTTTGTGAGTGCTGACAGTAATGAGAAGAAGGCAGTATATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacggttttatggttctgttatgttatggtttgcttaggttttattttgaattgtgttgtgaggccctaactgtttacccacatgtttatcttcaatatataaatatttatttgtatgattttctgatatgtcctttttgtttgtaccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC