Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGTCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCAAAGATTCTCACATATGgtatgtagttttctttctcctttggtggcttaaagtttcgtatattttttatttgatagtgtgaccatgcactatattcattatatatataaagaattttaattttaatttttgttag

Basic information

species Glycine max
transcript GLYMA03G38530.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38530.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 9
AGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGTCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCAAAGATTCTCACATATGgtatgtagttttctttctcctttggtggcttaaagtttcgtatattttttatttgatagtgtgaccatgcactatattcattatatatataaagaattttaattttaatttttgttag--
| ||||| || ||| | |||||||| ||||| || || |||||||||||||| || ||||||||||||||||| ||||| ||||| || || || |||||||||||       |     ||||||  |    || | ||      |   ||||| ||||||    || |   |  | | || |  ||  |     ||     ||||  ||| |||||   
AACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCAAGGACTCCCATATATGgtatgt-------tcctgactttggaag---gaaatatcaagctatagatattttatagtgctttcaagt--ttcaataatgacttacctctctgatccctcttttgttttgtgttacag

upper sequence: GLYMA03G38530.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G000177_T01 (Zea mays), 5'ss of exon 9
AGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGTCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCAAAGATTCTCACATATGgtatgtagttttctttctcctttggtggcttaaagtttcgtatattttttatttgatagtg-tgaccatgcactatattcattatatatataaagaattttaattttaatttttgttag
||||||| || ||| | ||||| || ||||| || || ||||||||||| || || ||||||||||||||||||||||| ||||| || || || || ||||||||| |||    |||||   |     |||     | | | ||||||  | | ||  || | |  ||    ||| | || | | | ||||    ||| | |                
AGCCAGTGCCTAAACTTGCTTGTCATAGTGTTGCATCGTGGTGTCATCCCCGTGCACCAAACCTTGATATTCTAACTTGTGTCAAGGACTCCCATATTTGgtatgta-tttctgctctccagagacatattag----ttgcagatttttc-tctaatgatgctcattatagcttat-tgcactgt-tctatactctattattacag-------------

upper sequence: GLYMA03G38530.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 9
AGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGTCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCAAAGATTCTCACATATGgtatgtagttttctttctcctttggtggcttaaagtttcgtatattttttatttgatagtgtgaccatgcactatattcattatatatataaagaattttaattttaatttttgttag
| || || || ||| | |||||||||||||| || ||||||||||| |||||||| ||||||||||||||| | |||||||| |||||||| ||||||||||||     ||| |||    ||||||    || |   | | |||| |||   |  ||    |||   ||  ||| |||  ||  || | |  ||                        
AACCTGTCCCGAAACTAGCTTGCCACAGTGTTGCATCTTGGTGTCACCCTCGAGCGCCAAACCTTGATATTTTGACTTGCGTTAAAGATTCACACATATGgtat----ctttgtttaagatttggtattgtatatggtagaatatatttatgtatattagatga--gtggtcta-attgtttgaatttttgcag------------------------