Sequence
atgc intronic sequence ATGC exonic sequenceGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAAAGGGAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTgtaagctttgatttcttgaatatacattcattggaggattcctctacatcatattgcatttatatttctgttttttttaacag
Basic information
species | Glycine max |
transcript | GLYMA03G38340.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 8
GGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAAAGGGAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTgtaag--ctttgatttcttgaatatacattcattggaggattcctctacatcatattgcatttatatttctgttttttttaacag
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GGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGgtaaatacttggaagtacttagattatttttctcatgtg----ctctacaac-tgtta-acttatcattttcaaaccttttatag
upper sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 9
GGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAAAGGGAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTgtaagctt-tgatttcttgaatatacattcattggaggattcctctacatcatattgcatttatatttct----------gttttttttaacag------------
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AGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGAAGGGAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaatgacatttt--ttttgtttgagttgaaaagttctaatttaaca----gcaattatgtttccaaaagggggggataattttcatgcatgggatttcttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151404914|gb|EV274728.1|EV274728EST: GAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACT ATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCT
genomic: GAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTgtaagctttg ... tttttaacagATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAAAGGGAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTgtaagctttgatttcttgaatatacattcattggaggattcctctacatcatattgcatttatatttctgttttttttaacag
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