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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctgaagttcttatcttgttttgtgcagcaaaaacaccaattgcactttaagttttgcttgctattgatttgagctgtatttttacctctttcactag

Basic information

species Glycine max
transcript GLYMA03G34890.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193477646|gb|FK442277.1|FK442277
EST:     TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG                         GTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
genomic: TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctg ... ctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
EST: gi|207782482|gb|GD754935.1|GD754935
EST:     TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG                         GTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
genomic: TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctg ... ctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
EST: gi|193419164|gb|FK381848.1|FK381848
EST:     TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG                         GTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
genomic: TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctg ... ctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
EST: gi|33387541|gb|CA850748.1|CA850748
EST:     TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG                         GTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
genomic: TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctg ... ctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
EST: gi|193424026|gb|FK386781.1|FK386781
EST:     TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG                         GTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
genomic: TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctg ... ctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
EST: gi|208154550|gb|GD956695.1|GD956695
EST:     TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG                         GTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
genomic: TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctg ... ctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
EST: gi|208086610|gb|GD884194.1|GD884194
EST:     TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG                         GTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
genomic: TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctg ... ctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
EST: gi|208213300|gb|GE012737.1|GE012737
EST:     TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG                         GTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
genomic: TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctg ... ctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
EST: gi|254324292|gb|GR840609.1|GR840609
EST:     TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG                         GTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT
genomic: TGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctg ... ctttcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGgtatactctgaagttcttatcttgttttgtgcagcaaaaacaccaattgcactttaagttttgcttgctattgatttgagctgtatttttacctctttcactag

- - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA