Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggcactcctctgactcgaaaacactttaatgtttactttagtcatgactaatgtggaaactgaattggttcaaaagttttggatagaagtatgg...

Basic information

species Glycine max
transcript GLYMA03G33000.5
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33000.5 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 8
ACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggcactcctctgactcgaaaacactttaatgtttactttagtcatgactaatgtggaaactgaattggttcaaaagttttggataga-agtatgg-
||||||| ||||| ||||||||||| ||||| ||||||||| ||||  | ||   |||||  || ||  |  |    ||||||||||||  |     ||   ||   |    ||||  ||||   |  ||  | ||  ||   ||        || |  |    | | | ||| | | ||| | 
ACAAGAAAAATGAGAACAAGGAAGTTGCAGTTAACGACTTTCTGCCATCTTCCAGTGCTTATGAGGCAATCCAGCATTCCATgtaagtgttatgatcctttgtctccatttatttatagtttgtgtatgt--taacatataccgatgtgtgtgtgatatacgcatatagaataaagaatataga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404690|gb|EV274504.1|EV274504
EST:     AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCAT                         GAGCTTGTATGCGGACTACATAGTG-AGAGCTTGAGACGGTAGTCGTTGAT
genomic: AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggca ... tattacgaagGAGCTTGTATGCGGACTACATAGTGGAGAGCTTGAGACGGTAGTCGTTGAT
EST: gi|10236851|gb|BE805739.1|BE805739
EST:     AACGACTTGTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATATATCCAT                         GATCTCGGATGGCGGACT-CATAGTGGAGAGCTTGAGACGG
genomic: AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggca ... tattacgaagGAGCTTGTATG-CGGACTACATAGTGGAGAGCTTGAGACGG
EST: gi|192296495|gb|FG989111.1|FG989111
EST:     AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCAT                         GAGCTTGTATGCGGACTACATAGTGGAGAGCTTGAGACGGTAGTCGTTGAT
genomic: AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggca ... tattacgaagGAGCTTGTATGCGGACTACATAGTGGAGAGCTTGAGACGGTAGTCGTTGAT
EST: gi|208043651|gb|GD843141.1|GD843141
EST:     AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCAT                         GAGCTTGTATGCGGACTACATAGTGGAGAGCTTGAGACGGTAGTCGTTGAT
genomic: AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggca ... tattacgaagGAGCTTGTATGCGGACTACATAGTGGAGAGCTTGAGACGGTAGTCGTTGAT
EST: gi|192324459|gb|FK015810.1|FK015810
EST:     AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCAT                         GAGCTTGTATGCGGACTACATAGTGGAGAGCTTGAGACGGTAGTCGTTGAT
genomic: AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggca ... tattacgaagGAGCTTGTATGCGGACTACATAGTGGAGAGCTTGAGACGGTAGTCGTTGAT
EST: gi|17022987|gb|BM094021.1|BM094021
EST:     AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCAT                         GAGCTTGTATGCGGA
genomic: AACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggca ... tattacgaagGAGCTTGTATGCGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGAAGAATGAAAACAAGGAAGTCGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTCGAAGCGGTTAATAGATCCATgtaagtggcactcctctgactcgaaaacactttaatgtttactttagtcatgactaatgtggaaactgaattggttcaaaagttttggatagaagtatgg

- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT