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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGAGTATTGGATACGCTATGTTTTGTGTATGGAAGCCAGTGGAAGCATGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAGgtaatttcattaagttccagtcatacgaatgcatttgtcatattcatctcttaagtttttaagctttgaagtgagatgagaaggtaatgtatctaatgga...

Basic information

species Glycine max
transcript GLYMA03G32410.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32410.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0005g04290.t01 (Vitis vinifera), 5'ss of exon 3
TCCTGAGTATTGGATACGCTATGTTTTGTGTATGGAAGCCAGTGGAAGCATGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAGgtaatttcattaagttccagtcatacgaatgcatttgtcatattcatctcttaagtttttaagctttgaagtgagatgagaaggtaatgtatctaatgga--------
||| ||||| |||||||| |||||||| || ||||| |||||||||||||||||||||||||| ||||  |||||||| || || ||||| ||||| ||||||      |  | ||| | |  ||| | |||| |  | ||| | |   ||  |  |         |||  || | |   |   |  ||  | |||   |        
TCCCGAGTACTGGATACGATATGTTTTATGCATGGAGGCCAGTGGAAGCATGGATCTTGCAAACAATGCCCTTGCTCGTGCTACTCAAGTTTTTGTCAAGgta------tggaattctatttttacta-tgcaatcttgatacttaaaactggaaatcaccgctcatgatctg-gttctaataatgttgagtttaaattattttcttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341005|gb|GR854733.1|GR854733
EST:     TGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAG                         AGACAACCAGAGATACATANNNNNNNGTGCTCGGTTCAAGGAGCAGACTGG
genomic: TGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAGgtaatttcat ... cataatgcagAGACAACCAGAGATACATA-TTTTTTGTGCTCGGTTCAAGGAGCAGACTGG
EST: gi|17400411|gb|BM177193.1|BM177193
EST:     TGTATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAG                         AGACAACCAGAGATACATATTTTTTGTGCTCGGTTCAAGGAGCAGACTGGA
genomic: TGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTTAAGgtaatttcat ... cataatgcagAGACAACCAGAGATACATATTTTTTGTGCTCGGTTCAAGGAGCAGACTGGA