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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATTTTTCGCCTGTTGTAGCCAAGTATGCCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCTgtatgtttgttttacccatcaaattcaactttgtcttacaaaactcattctaccatgatatcatggatcaaatgcagaagtttcacttagtgttatacaa...

Basic information

species Glycine max
transcript GLYMA03G23870.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125744|gb|BG316314.1|BG316314
EST:     CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCT                         CTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC
genomic: CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCTgtatgtttgt ... attttataagCTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC
EST: gi|22525661|gb|BU084472.1|BU084472
EST:     CCAGCATTCACCAGGAAAAAGTCAGCAACTTAATACTCCTTAATCCGCCT                         CTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC
genomic: CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCTgtatgtttgt ... attttataagCTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC
EST: gi|23053050|gb|BU577541.1|BU577541
EST:     CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCT                         CTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC
genomic: CCAGCATTCACCAGGAAAAAGTCAGAAACTTAATACTCCTTAATCCGCCTgtatgtttgt ... attttataagCTAACAGCCCAACATGCCAAGCTTCCACCAACATTGTCCATATTCAGCAAC