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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAGTTTGTTCAGgtatgtgttttatattgttggatttataagtttgtgatatttgtcacagtaatattttgtactttaatgtttacttattttccttaattatatttatcacag

Basic information

species Glycine max
transcript GLYMA03G22740.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os08g36994.1 (Oryza sativa), 5'ss of exon 11
GGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAGTTTGTTCAGgtatgtgttttatattgttggatttataagtttgtgatatttg-tcacagtaatattttgtactttaatgtttacttattttccttaattatattt-atcacag
 || | ||| || || || || || ||||||||||| |||||  |  | |||||||| || |||||||||||| ||||| | || ||||||||||||||||||     ||| |  ||||   |   | |   ||  | || |  || ||||   |||| | ||| |   |   | |  |    |  |  | |  || || |   
AGACTATCAGAAGGAAACACCCTCATCTTTCAGTTTATCTCCACGTCTATCAATATTTCCACAATTTATGTTTAATTTAAGGCGTTCTCAGTTTGTTCAGgtaatctgtttctcatgttcattcagtcatgctg-aacatatactctcagtttgatttag-actattgagcggattgttgccacggatatctgcttgattat--

upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 11
GGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAGTTTGTTCAGgtatg---------tgttttatattgttggatttataagtttgtgatatttgtcacagtaatattttgtactttaatgtttacttattttccttaattatatttatcacag---------------
 || |  ||||| ||||  |||||||||||||| || ||||| || || |||||||| || || ||||| |||||||| ||||| |||||||||||||||||||          || |||||| |  |   |||  |   || | ||  | ||   |  |  |||   |||| |        ||||| |||  ||  | ||| | |  ||                
AGATTACCAAAAGGACAACCCATCTTCTTTCAGCTTATCTCCAAGATTTTCAATATTTCCCCAGTTTATATTTCATTTGCGACGTTCTCAGTTTGTTCAGgtataactgactattggtttataattctatctttgcat-cttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789480|gb|BG652071.1|BG652071
EST:     CAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAGTTTGTTCAG                         GTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTAAAC
genomic: CAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAGTTTGTTCAGgtatgtgttt ... tttatcacagGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTAAAC