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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGTGGCACGGGATGGAGTTATTGGCTTGTATCGGGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAGgtacttgtgatcttctatttctggttattaagatttcaatctttgcactgtgcctagtgaaattacaattttgttcttattttcattattgtgagttgta...

Basic information

species Glycine max
transcript GLYMA03G08120.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G10900.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 9
GTATTGTGGCACGGGATGGAGTTATTGGCTTGTATCGGGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAGgtacttgtgatcttctatttctggttattaagatttcaatctttgcactgtgcctagtgaaattacaattttgttcttattttcattattgtgagttgta--
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GTATTGTGGAACGTGATGGTTTTATTGGATTATACAGGGGGTTTGTTCCCAATGCGTTGAAAACCCTACCAAACAGCAGgttcatgttaactcctgttcc--attttctctattctcttttagaaatccttctttatggttttgtggtgtagtttgaaactaggttccttcaggccttatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7146319|gb|AW508241.1|AW508241
EST:     TTGTATCGGGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAG                         CATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGA
genomic: TTGTATCGGGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAGgtacttgtga ... ctctatacagCATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGA