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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGACCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGATGATATCTGGGgtatgttggattactcttacctttagtgattattccattaccataagctagagagtatacagacattatatattttaattttcattcagttattcttcatgatgtctgcattctactttcatcag

Basic information

species Glycine max
transcript GLYMA03G07890.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 9
TCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGACCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGATGATATCTGGGgtatgttggattactcttacctttagtgattattccattaccataagctagagagtatacagacattatatattttaattttcattcagttattcttcatgatgtctgcattctactttcatcag
|||||||| ||| ||||||| ||||| || |||||| |  |||||||||| || ||||||||  |||||||||||||||||||  |||||||  |||||||||  ||   ||  ||| | |||       || || ||  |      ||   | || |        | | | ||   |  |        || || ||||  |                       
TCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTGTTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGGgtaacttcattt--tctgatcttgttatgctactctataccttgttccttttgtgtctgacctggctctgtgttcatacatgtgacattttcttgttcactag----------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 9
TCTGTGGCATGGGTTGCTCATATCATTATCTATCTATTAATTGACCCTCCTCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGATGATATCTGGGgtatgttggattactcttacctttagtgattattccattaccataagctagagagt---atacagacattatatattttaattttcattcagttattcttcatgatgtctgcattctactttcatcag
|| ||||| ||| ||||||||||| | || ||| |  | ||||| |||||||| ||||||||||| ||||| |||||||||||| | |||||| |||||||||         | | || |  |   || |||||  ||| || |   |||||   |   || | || ||  ||| || || || |   ||||                                    
TCAGTGGCTTGGATTGCTCATATCGTCATATATTTGCTGATTGATCCTCCTCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGATGATGTCTGGGgtactgctatagatttttgctgtctctg-ttattttatttcctttcactagatgatcttattctgagat-gtatcttgtacttcttcgtcag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730359|gb|BM525833.1|BM525833
EST:     TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGATGATATCTGGG                         GTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTG
genomic: TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGATGATATCTGGGgtatgttgga ... ctttcatcagGTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTG
EST: gi|58025422|gb|CX712163.1|CX712163
EST:     TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGATGATATCTGGG                         GTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTG
genomic: TCTTTCTCCTTTCTTGAATGAAGTTTTCATCAAGTTGGATGATATCTGGGgtatgttgga ... ctttcatcagGTCTTCTGGGTACAGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTG