Sequence
atgc intronic sequence ATGC exonic sequenceGAAATTCGTCCATGGACGCACATGATGGAGGTTCCGCAACTTCATGGATTTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtatcctgcttatgcttggcataaatgcttttttttaaaaaaaaaaaactattattctgtttaaattgttagaaatttaaaatcaagtgatacaagacat...
Basic information
species | Glycine max |
transcript | GLYMA03G07390.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G07390.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g64920.1 (Oryza sativa), 5'ss of exon 8
GAAATTCGTCCATGGACGCACATGATGGAGGTTCCGCAACTTCATGGATTTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtatcctgcttatgcttggcataaatg-cttttttttaaaaaaaaaaaactattattctgtttaaattgttagaaatttaaaatcaagtgatacaagacat-
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GAAATTCATCCTTGGACACATATGATGGAGGTCCCTCAATTGCATGGTTTTGGTCCAGCTGCTAATCGCTTGTTGGAGGCATATAACACACTTTTGAAGgtactagcggaatatttggtttatttgacattttgttgctcatttcaagttttgcttccctcta--tggtcaatgtgtcatgatctggttatttgaattggt
upper sequence: GLYMA03G07390.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G17620.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAATTCGTCCATGGACGCACATGATGGAGGTTCCGCAACTTCATGGATTTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtatcctgcttatgcttggcataaatgcttttttttaaaaaaaaaaaactattattctgtttaaattgt---tagaaatttaaaatcaagtgatacaa-gacat
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GAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAGgtgccccattgtctccttctatctgtatacttggttgtatcgactatattg--agtccatataatttatactttgattctgatacacaaatcgtttggcaacag
upper sequence: GLYMA03G07390.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 8
GAAATTCGTCCATGGACGCACATGATGGAGGTTCCGCAACTTCATGGATTTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtatcc---tgcttatgcttggcataaatgcttttttttaaaaaaaaaaaactattattctgtttaaattgttagaaatttaaaatcaagtgatacaagacat
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GAAATTCGCCCTTGGACTCACATGATGGAGGTACCACAGCTTCATGGGTTTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAGgtattccaatgctaaactcttctacaaat-ttcttacctgaaaagtgattttttcctatcaaattattctgttactttcaggaggcccgttaaaacaatga--
upper sequence: GLYMA03G07390.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S216_69V6.2 (Physcomitrella patens), 5'ss of exon 8
GAAATTCGTCCATGGACGCACATGATGGAGGTTCCGCAACTTCATGGATTTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATA---AAATGCTTT---TGAAG-
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GAAATTCGGCCATGGACGCATATGATGGACGTTCCCCAGCTTCATGGACTTGGACCTGCTGCAAATCGATTGCTGGATTCTTATAGCCAATTGCTTAAGgtaaagtttcgttttcttatggtggttagggtgaggaagccaatgaaaaagaggcaatccggttcattttgttatcatgtctaacgaaccttgttagtaaggtagcagtaagtgactcgcatacatagcactgatttaaagggttcttgcacccttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151395430|gb|EV265307.1|EV265307EST: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAG TTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCACTTGCCTTC
genomic: TTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtatcctgct ... tttgcaacagTTTTTGGGCAACCTACGGAATCTTAGAGACTCACATGCAGCACTTGCCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAATTCGTCCATGGACGCACATGATGGAGGTTCCGCAACTTCATGGATTTGGACCAGCTGCCAATCGTTTATTGGAGGCCTATAAAATGCTTTTGAAGgtatcctgcttatgcttggcataaatgcttttttttaaaaaaaaaaaactattattctgtttaaattgttagaaatttaaaatcaagtgatacaagacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa