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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtctttacatatttaactttttcagtacatagtacatacagatgtaacttcaacgattttgtttacccatcagaattataaatacatcaa...

Basic information

species Glycine max
transcript GLYMA03G04500.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 9
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtctttacatatttaactttttcagtacatagtacatacagatgtaacttcaacgattttgtttacccatcagaattataaatacatcaa
||||| |||||||| || || |||||||| |||||||| |||||||| ||||||||||| |||  ||| || |||||||      ||||||    |||   | ||| ||||   ||                                                          
GTGAGGGATGAGACGTATACCGCCTTTGAGAACATATACCCTGTGCTAACGGAGTTCAGAAAAGTCCAGCAGTGgtatg------tcttta----ttttgttatttaagtatgcag----------------------------------------------------------

upper sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G149238_T02 (Zea mays), 5'ss of exon 9
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtctttacatatttaactttttcagtacata-gtacatacagatgtaacttcaacgattttgtttacccatcagaattataaatacatcaa-
|||||||| ||||| ||||||||||| |||||||| |||||||||||  | |||||  | |||   || |||||||||| | || | |||    || |  |  |   ||| | |   |   | ||| |  |   ||      | |||  |   |     ||  |  ||   |  | 
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGgtatgtagttcttttttatcatgtttcaatcatagtgcgtgcatgactccagctacattctc--ttgctctgtcgataaaatgctatggtggatggctgcag

upper sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 9
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtcttta-catatttaactttttcagtacatagtacatacagatgtaacttcaacgattttgtttacccatcagaattataaatacatcaa
|||||||| ||||| ||||||||||| |||||||| |||||||| ||  | ||||| || ||||  || |||||||||| | ||   |||| |||  || |    |   | |   |  ||      |      |   |  || |||||        | |||  ||          
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccatagtgcatgcatgactcttgca-acggttgagattatcttgttctgttgataaaatggtag---------

upper sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G161418_T01 (Zea mays), 5'ss of exon 1
--------------------------GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtcttta-catatttaactttttcagtacatagtacatacagatgtaacttcaacgattttgtttacccatcagaattataaa-tacatcaa
                          |||||||| ||||| ||||||||||| |||||||| |||||||| ||  | ||||| || ||||  || |||||||||| | ||   |||| |||  || |    |   | |   |  ||      |      |   |  || |||||        | |||  ||   |  ||   
TTCATTTCATACTCCATTGTTTGTAGGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccatagtgcatgcatgactcttgca-acggttgagattatcttgttctgttgataaaatggtagggtggatgg-

upper sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G161418_T06 (Zea mays), 5'ss of exon 7
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtcttta-catatttaactttttcagtacatagtacatacagatgtaacttcaacgattttgtttacccatcagaattataaa-tacatcaa
|||||||| ||||| ||||||||||| |||||||| |||||||| ||  | ||||| || ||||  || |||||||||| | ||   |||| |||  || |    |   | |   |  ||      |      |   |  || |||||        | |||  ||   |  ||   
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccatagtgcatgcatgactcttgca-acggttgagattatcttgttctgttgataaaatggtagggtggatgg-

upper sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 9
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatga--atttgtctttacat------atttaactttttcagtacatagtacatacagatgtaacttcaacgatttt----gtttacccatcagaattataaatac-atcaa-----------------------
|||||||||||||| || || || ||||| |||||||| ||||| ||||| |||||| |||| ||||||||||||||||   | |||| |||  ||      | || | | |||    |    |  |     |||  | |   |   || ||    |   |   ||   |||| | |||   ||  |                       
GTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATGgtatgtttacttgttttttgattatgctacttgaatgtttttccatgatgctctgtttgattaatccgtaggaatatttgagggcaagaaatggaaattctgaatcttattgagggtgtttgggttggtatggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31461676|gb|CD403704.1|CD403704
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACCATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|27445915|gb|CA953038.1|CA953038
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAGAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|254322493|gb|GR837907.1|GR837907
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|193372010|gb|FK334625.1|FK334625
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGA
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGA
EST: gi|208110383|gb|GD911811.1|GD911811
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCA
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCA
EST: gi|208055198|gb|GD853719.1|GD853719
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|193362081|gb|FK326487.1|FK326487
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|208049718|gb|GD847081.1|GD847081
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAGGAGCAGGAGCAGTGGTCTGGCA
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCA
EST: gi|31455890|gb|CD397918.1|CD397918
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGATAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|254316348|gb|GR827885.1|GR827885
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|208251842|gb|GE045561.1|GE045561
EST:     AGTTCAAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAG-AAAGTTCGTG
genomic: AGTTC-AGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|208025200|gb|GD823864.1|GD823864
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAG