1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGgttagttatacttttgtacattttgtagattacaagagtgtcttccctttcaagtctagttaataaagtttagtatctccctgctcttgtttaaaatttcctcatcttctctttcattcacatttaacccatttgttttagcatgtgtcatataactactatctatttcattttctacatatcaagcag
species | Glycine max |
transcript | GLYMA03G03250.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAG CGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGGEST: gi|17153766|gb|BM143699.1|BM143699
genomic: CAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGgttagttata ... tatcaagcagCGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGG
EST: TGGAGATCGACTGTCACGGGCTGATATTACTGCTTCTTTTCAG CGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGGEST: gi|7283427|gb|AW596035.1|AW596035
genomic: TGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGgttagttata ... tatcaagcagCGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGG
EST: CAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAG CGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGG
genomic: CAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGgttagttata ... tatcaagcagCGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGgttagttatacttttgtacattttgtagattacaagagtgtcttccctttcaagtctagttaataaagtttagtatctccctgctcttgtttaaaatttcctcatcttctctttcattcacatttaacccatttgttttagcatgtgtcatataactactatctatttcattttctacatatcaagcag
- - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT