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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAGgtgagaaagtgagattaaatattgttttgtagaaaatgttgaatgtgttatctaacactgctttaatgaagtaactactgaaacttcaattttacttcatgtcctatag

Basic information

species Glycine max
transcript GLYMA03G01680.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 8
TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAGgtgagaaagtgagattaaatattgttttgtagaaaatgttgaatgtgttatctaacactgctttaatgaagtaactactgaaacttcaattttacttcatgtcctatag
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TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttagtatttagttggatctgctattttata--------tggatatagtaaagcata-tgatgtgatgcag--agttctg---tttgtgcttatattcatgtcttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395881|gb|EV265758.1|EV265758
EST:     CCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAG                         GGCACTGCTGGTGTTGCACTTGCTGGAATATTGGGAACTGTAAGAGCC
genomic: CCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAGgtgagaaagt ... tgtcctatagGGCACTGCTGGTGTTGCACTTGCTGGAATATTGGGAACTGTAAGAGCC