1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCTCCTCTTGGTGAAGCATGCTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTGGAAAGTCTTGGCTATAAAGATGATGAAGGAGTGGCGAATGAGgttctctatctaaattatattttactgaaatgcctcataccttttcatttttcctgtaaaaccttgattatttattaatttatttatttcttctcggggttatctttttccagcgatgaaacaataacaaatataatatatttattctttaaaggaggctaacttgtgtattctctctactattctggtattgcag
species | Glycine max |
transcript | GLYMA03G01300.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGTTCTGGAAAGTCTTGGCTATAAAGATGATGAAAGAGTGGCGAATGAG TTATCATTTCAGATGTGGACTGATCAAATEST: gi|9983350|gb|BE657458.1|BE657458
genomic: AAGTTCTGGAAAGTCTTGGCTATAAAGATGATGAAGGAGTGGCGAATGAGgttctctatc ... ggtattgcagTTATCATTTCAGATGTGGACTGATCAAAT
EST: AAGTTCTGGAAAGTCTTGGCTATAAAGATGATGAAGGAGTGGCGAATGAG TTATCATTTCAGATGTGGACTGATCAAATGCAGGACACATTAAATTGCAAGEST: gi|9984036|gb|BE658144.1|BE658144
genomic: AAGTTCTGGAAAGTCTTGGCTATAAAGATGATGAAGGAGTGGCGAATGAGgttctctatc ... ggtattgcagTTATCATTTCAGATGTGGACTGATCAAATGCAGGACACATTAAATTGCAAG
EST: AAGTTCTGGAAAGTCTTGGCTATAAAGATGATGAAGGAGTGGCGAATGAG TTATCATTTCAGATGTGGACTGATCAAATGCAGGACACATTAAATTGCAAG
genomic: AAGTTCTGGAAAGTCTTGGCTATAAAGATGATGAAGGAGTGGCGAATGAGgttctctatc ... ggtattgcagTTATCATTTCAGATGTGGACTGATCAAATGCAGGACACATTAAATTGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTCCTCTTGGTGAAGCATGCTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTGGAAAGTCTTGGCTATAAAGATGATGAAGGAGTGGCGAATGAGgttctctatctaaattatattttactgaaatgcctcataccttttcatttttcctgtaaaaccttgattatttattaatttatttatttcttctcggggttatctttttccagcgatgaaacaataacaaatataatatatttattctttaaaggaggctaacttgtgtattctctctactattctggtattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG