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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGGGGTATGCATACCCTGATACGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGgtatgtaaatggggttcatttgttgctcttaatattagtgatggcgtggcattttcttcaatcattaatggtcaaatttcgctcacttgaccag

Basic information

species Glycine max
transcript GLYMA02G47270.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 9
ATACGGGGTATGCATACCCTGATACGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGgtatgtaa--------------atggggttcatttgttg-ctcttaatattagtgatggcgtggcattttcttcaatcattaatg-gtcaaatttcgctcacttgaccag
||||||||||||||||| || ||||||||| |||||||||| || ||||| ||||| |||||| ||||||| ||||||||||||||  |||               |   |||||||||| |  ||  |    || ||  ||| ||  | |||  ||   | ||| ||   || | |  |    |  |   |||
ATACGGGGTATGCATACACTTATACGTGATGCTCAAACAACAAAGCATGATTTTGTCTTTTATGCTGACCGGTTGATTCGTTTGgtgggtattatttcctagagccacttggttcatttgataacttcttgacttggtagtgg-gtttcttttatttggttgattcatttatctagtcccttgtatctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180251|gb|HO025466.1|HO025466
EST:     AAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTG                         GTTGTAGAACATGGCCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAACC
genomic: AAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGgtatgtaaat ... acttgaccagGTTGTAGAACATGGCCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAACC