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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGgcacgtgattctcctttctctatatccatatatgtatatgtcacattgcttatatctgatttatgaagaaataattttaaatgcatttatttattttatttaatattctttgtaaaattgtaggatgattaataggatgatataacatatttttaaaatgttattaatctttgtcttgtttttcccataaatgttgatag

Basic information

species Glycine max
transcript GLYMA02G46350.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46350.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G065012_T03 (Zea mays), 5'ss of exon 9
AATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGgcacgtgattctcctttctctatatccatatatgtatatgtcacattgcttatatctgatttatgaagaaataattttaaatgcatttatttattttatttaatattctttgtaaaattgtaggatgattaataggatgatataacatatttttaaaatgttattaatctttgtcttgtttttcccataaatgttgatag
|  || || || ||||| || |||||||| ||||| |||||||| ||||| || || ||||||||||| || || ||| | || ||||  |||||||||||      | |  | |   ||   | |||| | |   | | || |||   |        | || |||| |||    |||||     ||||    | |  |  |||| || ||||  |                                                                                    
AGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATACTCCACGGGGAAAACAACATTCATAAAGCATTTACTAAAAACAAGTTATCCAGgtgaaacaataacatggatc---acccat-tgttcttgtatcccatcatt--------actt-tgaacaaac---tttaa-----tttaccagtatc-tgcaatactccttgtgcag-----------------------------------------------------------------------------------

upper sequence: GLYMA02G46350.2 (Glycine max), 5'ss of exon 9
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 9
AATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGgcacgtgattctcctttctctatatccatatatgtatatgtcacattgcttatatctgatttatgaagaaataattttaaatgcatttatttattttatttaatattctttgtaaaattgtaggatgattaataggatgatataacatatttttaaaatgttattaatctttgtcttgtttttcccataaatgttgatag
|| ||||| || ||||| ||||| ||||| |||||| ||||||| ||||| || || ||||||||||| || || ||| ||||||||  || ||||||||||| || || |  |||   |||| | | | |   | | || |    |   ||  |  ||| | | || || ||  |   ||    |  ||   |     | ||    |||| || || |         | |||       | | | || |||| |                                             
AACAGTGATTTCGATGCAAAACCTATGGTAATGCTTCTGGGTCAATACTCCACAGGAAAAACAACATTCATTAAGCATTTGCTTAAATCTACTTATCCAGgcaagttatccatcttatcctatcttcttctccttctgtgac---ctaactagtttcgatattttaaaaagta--tgggaacaggtcaatgattaaccgtaaaacagctttatataact---------tcaat-------tgtcatattttttcag--------------------------------------------

upper sequence: GLYMA02G46350.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 9
AATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGgcacgtgattctcctttctctatatccatatatgtatatgt-cacattgcttatatctgatttatgaagaaata-attttaaatgcatttatttattttatttaatattctttgtaaaattgtaggatgattaataggatgatataacatatttttaaaatgttattaatctttgtcttgtttttcccataaatgttgatag
||||| || |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || || |||||| |||| || ||||||||||||||    | ||| | || || |    ||| |   |||     |    |    | |  |||  ||||| |     |  ||||| ||                                                                                                                       
AATAGCGATTTTGATGCCAAACCTATGGTTATGCTTTTGGGTCAATACTCAACTGGAAAAACTACTTTCATTAAACATTTGCTGAAGAGTAGTTATCCAGgtgaattattgttctctcacaccttccctccttgtgcgcctgtgaaaaattcagctcttgtttattattttcttcattttgaacag--------------------------------------------------------------------------------------------------------------------