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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttcatagatttaaattgttttattctcctcaaaccacctcgaaatgatagaaattattactctcttctatctcctttctcttttattaaatttggcttgggtgatctatttaatgatttgcag

Basic information

species Glycine max
transcript GLYMA02G46200.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064235|gb|BU579008.1|BU579008
EST:     GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
EST: gi|9902767|gb|BE611735.1|BE611735
EST:     GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
EST: gi|192317500|gb|FK007538.1|FK007538
EST:     AATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: AATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
EST: gi|208226305|gb|GE023098.1|GE023098
EST:     GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
EST: gi|13481968|gb|BG511311.1|BG511311
EST:     GTGACAATTGATGTTCCAAGTCCTGAGCCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
EST: gi|213616511|gb|DB965709.1|DB965709
EST:     GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAAC
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAAC
EST: gi|6913780|gb|AW395310.1|AW395310
EST:     GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
EST: gi|192319332|gb|FK009874.1|FK009874
EST:     AAGGTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: AAGGTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
EST: gi|209721887|gb|BW680046.1|BW680046
EST:     GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
EST: gi|192317501|gb|FK007539.1|FK007539
EST:     AAGGTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: AAGGTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
EST: gi|120491274|gb|EH219441.1|EH219441
EST:     GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAAC
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAAC
EST: gi|209726695|gb|BW672449.1|BW672449
EST:     GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACG
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACG
EST: gi|7924360|gb|AW830386.1|AW830386
EST:     GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAG                         CTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC
genomic: GTGACAATTGATGTTTCAAGTCCTGAGTCAGGCGTGATTCTAAAGgtacagtttc ... tgatttgcagCTTCTAGCCAACGAAGGTGATACTGTTGAGCCAGGTAACAAGATAGCAATC