1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACTGGTCAAAATTTACTTGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtacttttttttcctgccctcccttcatatgaaccttgttatttcaattcctgcttttttcttatgcaatacatgggttacttttgcag
species | Glycine max |
transcript | GLYMA02G45610.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAEST: gi|207780812|gb|GD754301.1|GD754301
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATA
EST: TGCTACCGAGGAGAGANATGAAAAGATCCTTGACATGATTCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|193328139|gb|FK293376.1|FK293376
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAAT CTATTGCTTCTGAACTTAAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTEST: gi|4282637|gb|AI440556.1|AI440556
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTA-GGGGAAGATGGCAAGATAGTAGGCGCTCTTCT
EST: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|208153997|gb|GD953958.1|GD953958
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: ACCGTAGGTAGTAGATTATGAAAAGATCCTTGACATGATTCCTGATGAAT CCATTGCTTCTGAACTTAGGGGEST: gi|193377911|gb|FK341519.1|FK341519
genomic: ACCG-AGG-AG-AGAT-ATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGG
EST: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|298181814|gb|HO025989.1|HO025989
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|208122469|gb|GD921803.1|GD921803
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|208179591|gb|GD973594.1|GD973594
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: TGATTCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|193406246|gb|FK370585.1|FK370585
genomic: TGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|151404405|gb|EV274215.1|EV274215
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATCCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|58023254|gb|CX709995.1|CX709995
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: GCTACCCGAGGAGAGATATGAAAAGATCCTTGACATGATTCNTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|19271087|gb|BM887343.1|BM887343
genomic: GCTA-CCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTAEST: gi|207792263|gb|GD764169.1|GD764169
genomic: TGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCTA
EST: ATGAAAAGATCCTTGACATGATTCCTTGATGAAT CTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCT
genomic: ATGAAAAGATCCTTGACATGATTCC-TGATGAATgtactttttt ... acttttgcagCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGCTCTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACTGGTCAAAATTTACTTGCTACCGAGGAGAGATATGAAAAGATCCTTGACATGATTCCTGATGAATgtacttttttttcctgccctcccttcatatgaaccttgttatttcaattcctgcttttttcttatgcaatacatgggttacttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA