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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCTTATCTTTTGGGTCCTCCACCCAAAAACCTGCCCTTACCGCCTCCAGGAGTTCCTGAAAGTGTGgtaagtgcatgcttcaaattttttggttctattgctttgaaattattaatcaaagtcatcttgattagttaatgttggaaagttgatatttcccaaacag...

Basic information

species Glycine max
transcript GLYMA02G44810.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44810.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g32060.1 (Oryza sativa), 5'ss of exon 7
TGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCTTATCTTTTGGGTCCTCCACCCAAAAACCTGCCCTTACCGCCTCCAGGAGTTCCTGAAAGTGTGgtaagtgcatgcttcaaattttttggttctattgctttgaaattattaatcaaagtcatc-ttgattagttaatgttggaaagttgatatttcccaaacag
|||||| || || |||||||| |||||||| || |||||||||      || || || | ||| ||  | ||||| |||||||||||||| |||||||||||| |||| |  |    | | ||   |||  |     |||    | |  ||  |  |||  ||||    |  || |   ||| |  | ||  ||       
TGGGAAAATAGGGGAATGGCGGTTTGACAAAAGATCTTATCTTCGTTCACCACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgcttaatatttagtatt-atttcagtatgactgatgccacttctcttaaacatgattgacctttacatttacaaaattctaaatcaccttgttga

upper sequence: GLYMA02G44810.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G055020_T03 (Zea mays), 5'ss of exon 8
TGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCTTATCTTTTGGGTCCTCCACCCAAAAACCTGCCCTTACCGCCTCCAGGAGTTCCTGAAAGTGTGgtaagtgc----atgcttcaaattttttggttc-tattgctttgaaattattaatcaaagtcatcttgattagttaatgttggaaagttgatatttcccaaacag
|||||| || || ||||||||||||||||| || ||||| |||     ||| ||||| | ||| ||  |  | || ||||||||||||||||||||||||||| ||||    ||  | | |  ||   |   | | ||| | |    ||  ||   |   |    ||     ||| || |  |||| || | |  |         
TGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCTTACCTTCAATCTCCACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaacaatattgcgatgttagggaaacatgttgttcttttgtttctataaatgattggtttttcatgtttatat--gaaaattaagaactgtttgt---

upper sequence: GLYMA02G44810.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 5'ss of exon 7
TGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCTTATCTTTTGGGTCCTCCACCCAAAAACCTGCCCTTACCGCCTCCAGGAGTTCCTGAAAGTGTGgtaagtgcatgcttcaaatttttt------ggttctattgctttgaaattattaatcaaagtcatcttgattagttaatgttggaaagttgatatttcccaaacag
||| ||||||||||||||||||||||||||||| || | ||||   || |||||||| || || ||  || |||| ||||| || |||||||||||||||||| ||  |||| | |  ||  ||      ||  || |||  |  |||  || || ||||  || ||   | |  |||  |  |  |||  |     | ||     
TGGAAAGATTGGAGAATGGCGTTTTGACAAGAGATCATTTCTTAGTGGCCCTCCACCAAAGAATCTCACCCTACCTCCTCCTGGTGTTCCTGAAAGTGTGgtatgtctatgcctaatcttcattcctcaagggcctgttgagt--aaaccataaaacaaatccagctgtttcaaataacatctggcagtgcactcagctcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710619|gb|BW676545.1|BW676545
EST:     CTCCACCCAAAAACCTGCCCTTACCGCCTCCAGGAGTTCCTGAAAGTGTG                         GTGCGGCTTGTTAAAATGGTCAATGAGGCTACTGCAAACATACCTGAATGG
genomic: CTCCACCCAAAAACCTGCCCTTACCGCCTCCAGGAGTTCCTGAAAGTGTGgtaagtgcat ... tcattttcagGTGCGGCTTGTTAAAATGGTCAATGAGGCTACTGCAAACATACCTGAATGG