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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAAAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATGgtaatcacgtgaaagtcttggacatttgtggcctaaatacattcttgctgattttgaaatgttttcatactgatatacattgcaaactgtag

Basic information

species Glycine max
transcript GLYMA02G44690.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44690.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 9
CTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAAAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATGgtaatcacgtgaaagtcttggacatttgtggcctaaatacatt---cttgctgattttgaaatgttttcatactgatatacattgcaaactgtag
|| |||||||||||||| ||  | || ||||| || ||||||||||  ||| | ||||| ||||| | ||| ||||||||||| |||||||||  | |||      |||    |||    ||     || |   | |||| |  |  ||||  |||   |||  |  | ||    |       
CTTGTAGGAACTGATCACTGCACTTTCAATTCTACACAAAAAGCTCTAGGACTTGATGATTTCCGCAGAATACCTAATGGTGTTAATGgtaatagc-tgacttgactggtttcttgctttctctgctcactgcccctgctaacctgtaaatacttttgaacttgtccatatgtttag------

upper sequence: GLYMA02G44690.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 9
CTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAAAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATGgtaat-cacgtgaaagtcttg---gacatttgtggcctaaat-acattcttgctgattttgaaat---------------gttttcatactgatatacattgcaaactgtag---------
|| ||||| ||||||||||||||||| |||||||| || ||||||  |||||| ||||| ||||| ||||| ||||||||||||||||||||| || || |   ||      || ||||| |   | ||| |   | |  ||  || | || |               ||| | || || ||||   |||||| |    |         
CTTGTAGGGACTGATCATTGTGCCTTCAATTCCACACAGAAAGCTTTTGGAATTGATGATTTCCGAAAAATTCCTAATGGTGTCAATGgtaatacaagttatcatcaccactgatatttgggaagtcaattattatttccctagttatcaagttggtctcatttttccgttctaattcttatatttgttgcaatcctgggaacaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23730285|gb|BU763240.1|BU763240
EST:     AAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATG                         GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
genomic: AAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATGgtaatcacgt ... caaactgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
EST: gi|21994166|gb|BQ785694.1|BQ785694
EST:     AAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATG                         GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
genomic: AAAAGCTCGTGGAATCGATGACTTCCGTAAAATGCCTAATGGTGTCAATGgtaatcacgt ... caaactgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG