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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACAgtaagtactgtatcattttagagtaattactgcactaaggagaaaggctaacaacacactctttctagcatatggtcaattattagctgaaatttattga...

Basic information

species Glycine max
transcript GLYMA02G43150.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43150.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g18370.1 (Oryza sativa), 5'ss of exon 6
TTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACAgtaagtactgt-atcattttagagtaattactgcactaaggag---aaaggctaacaacacactctttctagcatat-ggtcaat-tattagctgaaatttattga
||| | ||  |  |||| || ||||| |||||| | ||||| ||||||||| |||| ||||||||||| ||||| |||||||| |||||| || | ||  ||||||  | |  ||| ||   |  | |  || ||  |    |   | |   |  |   ||| | ||  | | | || ||||||  ||| |||  ||  | |    
TTTATGAACTTGCTTGGCTATTGTGAGGAAGAGCAACCTTTTACCAGAGTGATGGTGTTTGAATATGCTCCAAATGGAACACTTTTTGAGTATCTGCATGgtaagtgttcttgtcagttatcatgattctcttcatcatcatgtccagaaattgtcggtacatttttatttgaacattggtcaagatatcagc--aacctca----

upper sequence: GLYMA02G43150.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g49240.1 (Oryza sativa), 5'ss of exon 5
TTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACAgtaagtactgtatcattttagagtaattactgcactaaggagaaaggctaacaacacactctttctagcatatggtcaattattagctgaaatttattga-----
||| | |||||  | || || |||||||||||| ||| ||| |||||||   |||| ||||| ||||| |||||||| ||||| |||||| || | ||  |||||  |||   |  ||||   ||||   | | ||        | |  |         | ||    | | | ||| ||||  |   | | || ||| |      
TTTATGAATCTGCTCGGCTATTGTGAAGAAGAGAATCTTTTTACCAGAGCTATGGTGTTTGAGTATGCTCCAAACGGGACACTTTTTGAGTATCTCCATGgtaagc-ctgcccctgtttac--taatctgttc-cttttattccatgtcatttctttgattttctgtgaacagggt-aattcctgtatcacatatatcgcttcaa

upper sequence: GLYMA02G43150.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G135359_T04 (Zea mays), 5'ss of exon 5
TTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACAgtaagtactgtatcattttagagtaatta-ctgcactaaggagaaaggct-------aaca-acacactctttctagcata--tggtcaattattagctgaaatttattga----------------------
||| | ||  |  |||| |||||||| |||||| |||| || ||||||||| |||| ||||||||||| ||||| || ||||| ||||||||| | ||  |||||  |  |    |  |    |  | |  | ||      | |||  ||       | |    | | | ||   |  ||   |  |  ||| ||     || |||    |                      
TTTATGAACTTGCTTGGCTACTGTGAGGAAGAGCATCCCTTTACCAGAGTGATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATGgtaagcgcgttgctgtcatgagtttctcagtttcatctgtcacaaaaactgttcttcagcgtgtagagttttatcactatgacttctgcattgttgatcaaagtttggcaatgccttcctgatttcaccgcag

upper sequence: GLYMA02G43150.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G56050.2 (Arabidopsis thaliana), 5'ss of exon 6
TTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACAgtaagtactgtatcattttagagtaattactgcacta--aggagaaaggctaacaacacactctttctagcatatggtcaattattagctgaaatttattga
|||||||| ||| |||| |||||||||||||| || |||||||| ||  | ||||| |||||||||||  ||||||||||| | ||||| ||||||||| |||||||    | |  |||||    || | | || ||  |      | | |  ||    |    |   |  | |   |  | | || |||| |         
TTTGTCAACCTTCTTGGTTACTGTGAAGAAGAAGAACCTTTCACTAGGATCTTGGTCTTTGAATATGCATCAAACGGAACAGTCTTTGAACATTTACACTgtaagtaacaaagctctttagtcatatgagt-cattattacactgtaagttgtcagattaaaagtgggaaaacaatatttactttt-gctgcag--------

upper sequence: GLYMA02G43150.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G40270.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACAgtaagtactgtatcattttagagtaattactgcactaaggagaaaggctaacaacacactctttctagcatatggtcaattattagctgaaatttattga
||||  || ||| |||| || ||||||||| |||| |||||||||||  | ||| | ||||| ||||| ||||| ||| |||| ||||||||||||||  || |||||| |     | |     ||| |     | | |  |      |  |       |||    || |  |  ||| || || | |  |         
TTTGCAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCACCAGGATCTTGATCTTTGAGTATGCTCCAAATGGATCACTCTTTGAGCATTTACATTgtgagtacttt-----tgtcacacaatca----gccatgttggcttcatttctttgtgatctaaagagaagctaatcatttttttgttacag--------

upper sequence: GLYMA02G43150.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0067g01550.t01 (Vitis vinifera), 5'ss of exon 8
TTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACAgtaagtactgtatcattttagagtaattactgcactaaggagaa---aggctaacaacacactctttctagcatatggtcaattattagctgaaatttattga-
|||||||| ||| | ||||| |||||||||||||| |||||||||||| || |||||||||||||||| || || ||||| || |||||||||||||| |||||| |    ||  ||||    | || | |    |||   ||    |   ||    || | ||    ||  |  |||  | ||| |  ||  | |   |||| 
TTTGTCAACCTTCTCGGATATTGTGAAGAAGAGGAACCTTTCACCAGAATGATGGTTTTTGAATATGCTCCGAATGGAACGCTTTTTGAGCATTTACATAgtaagcatcaaattctttttc--ttatcattttcttaaaaggactttaatttatggtcaaaatcaggatataacttggcaagttact--ctatattcagttgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6916048|gb|AW397578.1|AW397578
EST:     GTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACA                         TAAAAGAGGCTGAGCACTTGGATTGGGGAACAAGACTTAGAGTTGCAACGG
genomic: GTTGGTTTTTGAATATGCCCCAAACGGAACACTATTTGAGCATTTACACAgtaagtactg ... tgaattccagTAAAAGAGGCTGAGCACTTGGATTGGGGAACAAGACTTAGAGTTGCAACGG