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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTACATCTGTGGGAGGCTTTTATGCCATAAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttctgaccttgttataacttttttgttgtaaagtggggtatgaaatggcatttttacaaattccatttggttattatcacag

Basic information

species Glycine max
transcript GLYMA02G42560.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 9
AGCTACATCTGTGGGAGGCTTTTATGCCATAAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttctgaccttgttataacttttttgttgtaaagtggggtatgaaatggcatttttacaaattccatttggttattatcacag
|||||||||| | ||||| ||||||||||| || ||| |||| ||||| ||| | |||||||| |||||   | | ||||||  ||| |||||||||||||||||||||||| ||  ||     |  ||||| | |     |   || |  |    |  |||   ||   || || || ||||   ||
AGCTACATCTATTGGAGGTTTTTATGCCATCAATAGGCGAGGGCAGGTGTTACTTGCTACTGTAAATGAGGCAGCAATTGTGCCTTTCGTCAGTGGCCAAgtatgtttctgagctgatt-----tcctttgtggcatgtcagaaaattatcttctgtgcttatggatgttatctgattcttattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193697299|gb|FK636159.1|FK636159
EST:     TATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAA                         CTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATCTTCCT
genomic: TATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttct ... attatcacagTTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATCTTCCT