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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCAAATGCCCCAACAATGCACATACCGgtatgcatgattttatatttcatattatcaattcatatttgtggatttcaatgcaaataaagtattcctatgttttttaattatatttggacatatgtgccag

Basic information

species Glycine max
transcript GLYMA02G35240.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35240.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 7
TCCTAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCAAATGCCCCAACAATGCACATACCGgtatgcatgattttatatttcatattatcaattcatatttgtggatttcaatgcaaataaagtattcctatgttttttaattatatttggacatatgtgccag
|||| | || |||||||||||||| |||||||||||||| || ||||| ||||| |||||||| | ||||||||  ||  | || || |||||||| ||||||||  |  || || ||    |          | | ||| ||   |   ||     | |  |||  ||    |||  | ||||     |             
TCCTCGACGCCCAGATTTGCGTCTTATTCTGATGAGTGCTACGATTAACGCTGACATGTTCTCAACATACTTTGGGAACTCTCCCACTATGCACATCCCGgtatgtctagttgtaaatccagtga--------cttgtttatga--tctgatattcgtgacttatctct----tttcaacttattgccag-------------

upper sequence: GLYMA02G35240.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 7
TCCTAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCAAATGCCCCAACAATGCACATACCGgtatgcatgattttat--atttcatattatcaattcatatttgtggatttcaatgcaaataaagtattcctatgttttt-taattatatttggacatatg-tgccag
|||| |||| |||||| ||||||| ||||| |||||||| ||||||||||||||  ||||||| |||||||||| |||||||||||| || || ||||||||||    ||| || |   | |     |       ||| | | | ||  | | |  | | |   ||||  | | ||| |  |||  |||      ||||| || |||
TCCTCGGCGACCAGATCTGCGTCTTATTCTAATGAGTGCTACCATTAATGCTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtggatctttttagtcttgagctgctgggacatgtgttttgaacttattcaacaca---tatttgtgtatttatgcaatattatccttcaatatgctggcag