1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TATCTTTCTAAGTATACCAACTGTTCTTGATTCATCATTGGCTCCTGAAGGCCGTCATATCCTTCATATATTCACAACTTCTTCCATGGAGGACTGGGAGgtaggcaatactgaatactgagtacttataaacaaagttgaagattttcatgttgcttgcttctatgactttagattttttttttttttgcctcctgttttattcatttgcagattagtttatgcataaaatctcaatatcaaatatgtcattgttttatgtcctag
species | Glycine max |
transcript | GLYMA02G34060.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCCGTCATATCCTTCATATATTCACAACTTCTTCCATGGAGGACTGGGAG GGTCTCTCAAGAGTAGAATATGAGGCAAAGAAGCAGCTTGTAGCAGATGAAEST: gi|51341204|gb|CO982521.1|CO982521
genomic: GCCGTCATATCCTTCATATATTCACAACTTCTTCCATGGAGGACTGGGAGgtaggcaata ... tatgtcctagGGTCTCTCAAGAGTAGAATATGAGGCAAAGAAGCAGCTTGTAGCAGATGAA
EST: TTCATATATTCACAACTTCTTCCATGGAGGACTGGGAG GGTCTCTCAAGAGTAGAATATGAGGCAAAGAAGCAGCTTGTAGCAGATGAAEST: gi|192316621|gb|FK008242.1|FK008242
genomic: TTCATATATTCACAACTTCTTCCATGGAGGACTGGGAGgtaggcaata ... tatgtcctagGGTCTCTCAAGAGTAGAATATGAGGCAAAGAAGCAGCTTGTAGCAGATGAA
EST: GCCGTCATATCCTTCATATATTCACAACTTCTTCCATGGAGGACTGGGAG GGTCTCTCAAGAGTAGAATATGAGGCAAAGAAGCAGCTTGTAGCAGATGAA
genomic: GCCGTCATATCCTTCATATATTCACAACTTCTTCCATGGAGGACTGGGAGgtaggcaata ... tatgtcctagGGTCTCTCAAGAGTAGAATATGAGGCAAAGAAGCAGCTTGTAGCAGATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCTTTCTAAGTATACCAACTGTTCTTGATTCATCATTGGCTCCTGAAGGCCGTCATATCCTTCATATATTCACAACTTCTTCCATGGAGGACTGGGAGgtaggcaatactgaatactgagtacttataaacaaagttgaagattttcatgttgcttgcttctatgactttagattttttttttttttgcctcctgttttattcatttgcagattagtttatgcataaaatctcaatatcaaatatgtcattgttttatgtcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA