1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCAGCTGAGGAATTTGTTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaatgattctcagcttgaatctttaattgatatattgtctagaaaatcctgcaattaatgatttaagtggtaatgacaactatccttactttga...
species | Glycine max |
transcript | GLYMA02G16010.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|192311298|gb|FK003769.1|FK003769
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAEST: gi|31467102|gb|CD409130.1|CD409130
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCA
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|37995085|gb|CF806674.1|CF806674
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|254346696|gb|GR856418.1|GR856418
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|192314162|gb|FK011534.1|FK011534
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAGGTCGGGCTCTCAAGCAGAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|214007958|gb|DB987846.1|DB987846
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACATCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|192311299|gb|FK003770.1|FK003770
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|213593103|gb|DB975350.1|DB975350
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TAGCATGAGGACAAAC-ACTAGGAAGATACGAAAGAGTGAATTGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|7029104|gb|AW458878.1|AW458878
genomic: TACCATGAGGAC-ACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|7925628|gb|AW831654.1|AW831654
genomic: TACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|14258668|gb|BG881576.1|BG881576
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTANGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAACAAGGGTTEST: gi|254344596|gb|GR855467.1|GR855467
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTT
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|12773202|gb|BG238129.1|BG238129
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|10238450|gb|BE807338.1|BE807338
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|16997020|gb|BM086392.1|BM086392
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|193526955|gb|FK483305.1|FK483305
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAEST: gi|6134950|gb|AW133343.1|AW133343
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCA
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCANGGGTTTAACAATATGACEST: gi|22540559|gb|BU090402.1|BU090402
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTACGAAGATACGAAAGAGTGAATCGTCTGAG GGTCAGTCGGGCTCTCAAGCATAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|254323696|gb|GR836035.1|GR836035
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|21995150|gb|BQ786678.1|BQ786678
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACEST: gi|31459683|gb|CD401711.1|CD401711
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
EST: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAG GGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
genomic: TTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tatataacagGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCAGCTGAGGAATTTGTTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGgtaagtcaatgattctcagcttgaatctttaattgatatattgtctagaaaatcctgcaattaatgatttaagtggtaatgacaactatccttactttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA