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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAATTTTAGCTCAGGCCGCTATTTTGGTGGCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAGgtatagatatatcccatgtgtagatatcttgatatgaagcccaccactttatgcaatagacccttacttacatgtacatttttttaatgtttatattttag

Basic information

species Glycine max
transcript GLYMA02G15070.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G15070.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv03s0063g00610.t01 (Vitis vinifera), 5'ss of exon 9
GTAAATTTTAGCTCAGGCCGCTATTTTGGTGGCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAGgtat---agatatatcccatgtgtagatatcttgatatgaagcccaccact---ttatgcaatagacccttactt--acatg--tacatttttttaatgtttatattttag-------
|| || |||||||||||||| ||||||||||| ||  |||| ||  |||  || ||||||||||||||||| || |||||||||    ||| | || | |  | |  ||| | || | |||  |  |    |   | ||||| |      | | |   ||||   ||   ||| |||||||| || |  ||        
GTGAACTTTAGCTCAGGCCGTTATTTTGGTGGAAATGACAAAGACCTTGGCTCGCGTCTTCCATTTGATGCTGGTTTTGAGgtagtggagaaaaatactaaatttgtataccatggtgtgattcttaatggtcaatcatgcattcagtagtcattgtaacattattaatgtttcttaatgttgatttcctaaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125716|gb|BG316286.1|BG316286
EST:     GCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAG                         GCTGTAGGGATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTT
genomic: GCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAGgtatagatat ... tatattttagGCTGTAGGGATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTT
EST: gi|23051289|gb|BU577071.1|BU577071
EST:     GCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAG                         GCTGTAGGGATTATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTT
genomic: GCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAGgtatagatat ... tatattttagGCTGTAGGGATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTT
EST: gi|7926508|gb|AW832534.1|AW832534
EST:     GCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAG                         GCTGTAGGGATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTT
genomic: GCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAGgtatagatat ... tatattttagGCTGTAGGGATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTT
EST: gi|19935164|gb|BQ080194.1|BQ080194
EST:     GCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAG                         GCTGTAGGGATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTT
genomic: GCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAGgtatagatat ... tatattttagGCTGTAGGGATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTT