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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTCACCAATACACTTATACTGCCTGTTATAAATGGGCCTACAGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactttctttgtgtttatacacacacagctactaatttttcttagaatcccatgtatgttgttgttattgttattattattatgattatacag

Basic information

species Glycine max
transcript GLYMA02G14210.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 8
CTATTTCACCAATACACTTATACTGCCTGTTATAAATGGGCCTACAGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactttctttgtgtttatacacacacagctactaatttttcttagaatcccatgtatgttgttgttattgtta-------ttattattatgattatacag---------------------------
|||||||||||| |||||||| || || ||||| ||||||||||||||||| |||    | ||||   || | ||||| ||||| || ||||| ||||||  |||   |  ||| |  | |  ||     |||      | ||  ||   | || |   | ||  |||  ||        |  ||| |   | | ||                              
CTATTTCACCAACACACTTATTCTTCCGGTTATCAATGGGCCTACAGAGGGGCTTGCACTTATATTTGTCAGCCACTTCTTCACAGCCATCGTCGgtatg--cttctctcttgtctgca-atccatgaaaacttcaccctatttaaagtgcttggacaatctttctatacttgggtttggtctttacttcaactctatctttcttctttttttttttctgtctaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208141850|gb|GD940462.1|GD940462
EST:     AGAGGGTCTTATGATAATATACATCTGTCACTTTT-CACTGCTATCGTGG                         GTGGCTGAGTGGTGGGTTCAGCAATTT
genomic: AGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactt ... gattatacagGTG-CTGAGTGGTGGGTTCAGCAATTT