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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAATAATAGAATATATACCCTTATTAGCAAGTCAATTGGGGGTTGGGTTTTTTTATGACAAACTTGGTGCTCTTTGCATGCAGTGGTTACAGGACAAGgtttgtggactctacatgctagtttgagcatattttaggaaaccaccttttctacatgactattgtcgttaacctcattgtttgttgtag

Basic information

species Glycine max
transcript GLYMA02G10790.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G25800.1 (Arabidopsis thaliana), 5'ss of exon 8
TGCAATAATAGAATATATACCCTTATTAGCAAGTCAATTGGGGGTTGGGTTTTTTTATGACAAACTTGGTGCTCTTTGCATGCAGTGGTTACAGGACAAGgt--ttgtggactctacatgctagt-ttgagcat-attttaggaaaccaccttttctacatgactattgtcgttaacctcattgtttgttgtag--------------------------
||| ||||| || ||||| || || || |||||||| || || ||||| || ||| | || || |||||||||||||||||||| |||||||| ||||||||  || |        | | ||  |  || | || ||   |  | ||| | | || |  ||    ||||   ||    |  || ||| || |                            
TGCTATAATCGAGTATATCCCTTTGTTGGCAAGTCAGTTAGGTGTTGGCTTCTTTGACGATAAGCTTGGTGCTCTTTGCATGCAATGGTTACAAGACAAGgtatttctttctctctcttacttttactgggaatgatcagattataccgcttcttatttatagaaattgatttttttttttttttttttttttttttttttttgcggatgctctcattag

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 9
TGCAATAATAGAATATATACCCTTATTAGCAAGTCAATTGGGGGTTGGGTTTTTTTATGACAAACTTGGTGCTCTTTGCATGCAGTGGTTACAGGACAAGgtttgtggactctacatgctagtttgagcatattt-taggaaaccaccttttctacatgactattgtcgttaacctcattgtttgttgtag-
 || ||||| || ||||| ||||| || || |||||||| || || || || ||| |||| || |||||||||||||||||||| |||||||| ||||||||   |  | |||  |   |  ||  | |||     ||   ||     |  |||  |   ||       || |  | ||| |   ||||   
GGCTATAATCGAGTATATTCCCTTGTTGGCCAGTCAATTAGGTGTAGGCTTCTTTGATGAGAAGCTTGGTGCTCTTTGCATGCAATGGTTACAAGACAAGgtccctc-attctctaccttcattgaatcatccagataaataaatttgtcgtctctactgcttgaaattttgaaataattataaattgtcag

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 8
TGCAATAATAGAATATATACCCTTATTAGCAAGTCAATTGGGGGTTGGGTTTTTTTATGACAAACTTGGTGCTCTTTGCATGCAGTGGTTACAGGACAAGgtttgtggactctacatgctagtttgagcatattttaggaaaccaccttttctacatgactattgtc-gttaacctcattgtttgttgtag------------
|||||||||||| ||||| || || || |||||||| |||||  |   ||||||| ||||  | |||||||||||||||||||||||| ||||||| ||||||||||   | |   ||     |  |||||  ||| | ||   |   |   | | |   | |  ||   |||    ||  |||    |              
TGCAATAATAGAGTATATTCCTTTGTTGGCAAGTCAGTTGGGTATAAAGTTTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAGgtttgtg---tttctctgtcttgtcaagcatcatttggaaatatataatgctttcttttttttattctactaattcaatcctttacaattctatatttttttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15202124|gb|BI425235.1|BI425235
EST:     TGCATGCAGTGGTTACAGGACAAG                         GTTCATTCGATCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGAA
genomic: TGCATGCAGTGGTTACAGGACAAGgtttgtggac ... tttgttgtagGTTCATTCGATCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGAA
EST: gi|58015550|gb|CX702292.1|CX702292
EST:     TTTGCATGCAGTGGTTACAGGACAAG                         GTTCA-TCGATTCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGA
genomic: TTTGCATGCAGTGGTTACAGGACAAGgtttgtggac ... tttgttgtagGTTCATTCGA-TCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGA
EST: gi|6666156|gb|AW277615.1|AW277615
EST:     NNNNNNATGACAAACTTGGTGCTCTTTGCATGCAGTGGTTACAGGACAAG                         GTTCATTCGATCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGAA
genomic: TTTTTTATGACAAACTTGGTGCTCTTTGCATGCAGTGGTTACAGGACAAGgtttgtggac ... tttgttgtagGTTCATTCGATCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGAA