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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGgtacatattcaattggactctgaaagataaggagtcattattttgtagttggctacttagattttggttccaaagcctcaattaatttcacgattatgattttacttgaaaaaaaacttttttcaaatgtaaaaaaatatatatattaaaagatttttcttttcttttgaatgagtaacgcag

Basic information

species Glycine max
transcript GLYMA02G10590.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 9
TTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGgtacatattcaattggactctgaaagataaggagtcattattttgtagttggctacttagattttggttccaaagcctcaattaatttcacgatt-atgattttacttgaaaaaaaacttttttcaaatgtaaaaaaatatatatattaaaagatttttcttttcttttgaatgagtaacgcag
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TTGTTTGGTCTTGGTGTTGCCAATATCTGTGGTTCATTCTTTTCAGCATACCCCACGACAGgtg-agatttatttgaggtttgctgagctgcaaattgaggttcatcagtca--tacctgtagtggagattaacacaaagcattaatttaatccttcaggatctagtgtttcatggaaatttttataaccaagatatgcttttgaaaggtagcttcttttatttatttttgaata--ttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730274|gb|BM525785.1|BM525785
EST:     TGGTGTTTCCAATGTTCTTGGTTCANNNNNNNCAGCATACCCCACAACAG                         GATCCTTTTCAAGGTCAGCTGTAAATCATGAAAGCGGTGCAAAATCTGGTG
genomic: TGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGgtacatattc ... agtaacgcagGATCCTTTTCAAGGTCAGCTGTAAATCATGAAAGCGGTGCAAAATCTGGTG
EST: gi|254333563|gb|GR848481.1|GR848481
EST:     TGGTGTTTCCAATGTTCTTGGTTCANNNNNNNCAGCATACCCCACAACAG                         GATCCTTTTCAAGGTCAGCTGTAAATCATGAAAGCGGTGCAAAATCTGGTG
genomic: TGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGgtacatattc ... agtaacgcagGATCCTTTTCAAGGTCAGCTGTAAATCATGAAAGCGGTGCAAAATCTGGTG