1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAGTGTTTTATATGACTTTCTGCAAAAAGAGGTCATAGCCTTGAGGAAAGCTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAGgtaagtgtttggtctatttattgtgtttggatataatccttgacttcttatgtataaatgatagtccttgctaattgtttccaatggtcatcatctatcag
species | Glycine max |
transcript | GLYMA02G09390.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAEST: gi|20075796|gb|BQ094579.1|BQ094579
genomic: CTAAAAGATAAAGATGATGCTATTGAGgtaagtgttt ... catctatcagATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
EST: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAEST: gi|23732761|gb|BU764555.1|BU764555
genomic: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAGgtaagtgttt ... catctatcagATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
EST: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAEST: gi|11274709|gb|BF325044.1|BF325044
genomic: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAGgtaagtgttt ... catctatcagATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
EST: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAEST: gi|298195439|gb|HO039270.1|HO039270
genomic: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAGgtaagtgttt ... catctatcagATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
EST: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAEST: gi|14011056|gb|BG725978.1|BG725978
genomic: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAGgtaagtgttt ... catctatcagATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
EST: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
genomic: CTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAGgtaagtgttt ... catctatcagATGTTAGCAAAGAAGGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTGTTTTATATGACTTTCTGCAAAAAGAGGTCATAGCCTTGAGGAAAGCTGGTCACGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCTATTGAGgtaagtgtttggtctatttattgtgtttggatataatccttgacttcttatgtataaatgatagtccttgctaattgtttccaatggtcatcatctatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG