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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTgtaagcacagactactactcattctgttatttcttttttcttatttttttgctagttacatttcctttcttgattatagagttcaaatagctgagtaaatttcatag

Basic information

species Glycine max
transcript GLYMA02G07100.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07100.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 10
GGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTgtaagcacagactactactcattctgttatttcttttttcttatttttttgctagttacatttcctttcttgattatagagttcaaatagctgagtaaatttcatag--------------------
||||||||||||| | |||||||||||||||||| ||||||||||||||| | | |    || |   | ||||||      ||  ||||  | |  | |||| |    | |||    | |||  |||  ||      || |||  | |                    
GGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATTgtaagcaca-atttcattacaatacttcatttctccagaattggttttcagttt-tcacatatatgattttgg--gttgagggcaataaggatgacaagtttggttgaatcaatgtgaatgttgcag

upper sequence: GLYMA02G07100.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04060.t01 (Vitis vinifera), 5'ss of exon 10
GGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTgtaagcacagactactactcattctgttatttcttttttcttatttttttgctagttacatttcctttcttgattatagagttcaaatagctgagtaaatttcatag--------------------
||||||||||||| |  ||||||||||||||||| ||| ||||||||||| | | |    || ||  || |||||      ||  ||||  | |  | |||| |  | | |||  |  ||||  |||  ||      || |||  | |                    
GGTGGTATTCTTACTTGTGGCTTCCATTCATCCCCTTAGTTgtaagcaca-atttcattacaatcctttgtttctccaggattggttttcagttt-taacatatgttcttttgggttgagag--caataaggatgacaagtttggttgaatcaatgtgaatgttgtag