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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTCAGGTGCCGGTTGCCTCGCCCTGGACAGgtggttcatgcaaccccaacctttccctctagaaaaataaaaagaaaaaagaatggtcattccatttataatatctttgaaatatctcctcaatatgcaaagaatttatcttgtaaatcctatcgagtgacttatatggaagcttcttcttacttatatcctcttgtag

Basic information

species Glycine max
transcript GLYMA02G06790.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 5'ss of exon 11
GCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTCAGGTGCCGGTTGCCTCGCCCTGGACAGgtggttcatgcaaccccaacctttccctctagaaaaataaaaagaaaaaagaatggtcattccatttataatatctttgaaatatctcctcaatatgcaaagaattta--tcttgtaaatcctatcgagtgacttatatggaagcttcttcttacttatatcctcttgtag
             |||| ||||| ||||| ||||||||||||||||||||  | || ||  | || ||  |  |||| || |||||||| |   || | |  ||| |  ||| |  |  || | |  ||      | | ||  | |       | ||||||||||   ||  |     | |     |   || |   ||   |  |||  | |||                                           
------------GTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGGTTGG--ATCCCATGCCA-CTATTCTCAgttcaagattttaagctcttatgtatattaacgtatactttaatatcttttgtatggccgtgtatttgcttacatatgtgattcccctgcatctgaacga-------------------------------------------

upper sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 8
GCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTCAGGTGCCGGTTGCCTCGCCCTGGACAGgtggttcatgcaaccccaacctttccctctagaaaaataaaaagaaaaaagaatggtcattccatttataatatctttgaaatatctcctcaatatgcaaagaatttatcttgtaaatcctatcgagtgacttatatggaagcttcttcttacttatatcctcttgtag
||||| |||||  |||| ||||| ||||| ||||||||||||||||||||  | || ||  | || ||  |  |||| || |||||||| |   || | |  ||| |  ||| |  |  || | |  ||      | | ||  | |       | ||||||||||   ||  | | |  || |||  | |                                                                  
GCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGgttgg--atcccatgcca-ctattctcagttcaagattttaagctcttatgtatattaacgtatactttaatatcttttgtatggc-cgtgtatttgcttacat-----------------------------------------------------------------