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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGAGCAGGATACCAGCTCATAGATATGATAACCGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGgtatccttctgatatcgtctattttcaaaatctatagtttttgcatatggaattcactctaatataattcaaggattttatattgatag

Basic information

species Glycine max
transcript GLYMA02G06720.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06720.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
TAGGAGCAGGATACCAGCTCATAGATATGATAACCGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGgtatcct-tctgatatcgtctat-tttcaaaatctatagtttttgcatatggaattcactctaatataat--tcaaggattttatattgatag----
|  |  |||| || | | | ||  | ||||| || || |||| |||||| |||||||| |||||||||||||| || ||| |||||||||| || || ||||||  | |||  |||  ||| | |  |||||| | || ||  |  || | |  || |      | |      |||  | |   |  | | |     
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctctctatcccaaaatgtttacttgcttgat-tagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag

upper sequence: GLYMA02G06720.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S395_19V6.1 (Physcomitrella patens), 5'ss of exon 7
TAGGAGCAGGATACCAGCTCATAGATATGATAACCGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGgta---tcctt---ctgatatcgtctattttcaaa---atctatagtttttgcatatggaattcactctaata--taattcaagg-attttatattga--tag-------------------------------------------------------------------------------------------
 |  | |  || |||   | | | || ||   || ||       |  ||    |||| |||||| || || |||||||||||| ||||||| |||||||||||   ||| |   |||||    | ||| |  | |   || |||| || |   ||  |  ||||  | |  |    |||| | |  ||| |  |   |  |||                                                                                           
GAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAAAAGCAGAAACTAACTCGTCATTGTGAGGTCACTGCCATACTTGTTCTGTATGGACTTCCTAGgtaagttcccttgtctgatgatatatatatatatatatatatataattatgttat-cgagattcgttatccttgccaatttatgctattgttcacctacctagctgcatgtaaaatgccactgcagtttgttcccaatttttctgttcatttcccatcgttgtttactgatcgggggttgtttgaattctgcag