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GTTGGCTTTTCTGCACATACTGTCGGTGATGAAAATCATGAGGATGTCACTCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATGgtgagtctagtaaatgttttcctctagatatcatgaggaaatgcttacccattattatccttttccttttttcgcacatgctaacgcacgtgcacacact...
species | Glycine max |
transcript | GLYMA02G04920.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCCGCCCTTTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATG GTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCAATAAGTCTAAEST: gi|254335102|gb|GR844887.1|GR844887
genomic: TCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATGgtgagtctag ... atggctgcagGTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCAATAAGTCTAA
EST: TCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATG GTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCAATAAGTCTAAEST: gi|208211795|gb|GE010420.1|GE010420
genomic: TCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATGgtgagtctag ... atggctgcagGTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCAATAAGTCTAA
EST: TCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATG GTGTATCTGCAGCAATGAEST: gi|151410266|gb|EV280081.1|EV280081
genomic: TCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATGgtgagtctag ... atggctgcagGTGTATCTGCAGCAATGA
EST: TCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATG GTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCA-TAAGTCTAAEST: gi|19347302|gb|BM892182.1|BM892182
genomic: TCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATGgtgagtctag ... atggctgcagGTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCAATAAGTCTAA
EST: TCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATG GTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCAATAAGTCTAA
genomic: TCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATGgtgagtctag ... atggctgcagGTGTATCTGCAGCAATGAATGAGCTACGTCCATGTGCCCCAATAAGTCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGCTTTTCTGCACATACTGTCGGTGATGAAAATCATGAGGATGTCACTCCGCCCTCTAATTTGATGGAGCATCCACCTCTTGCTGTTTTTATTAATGgtgagtctagtaaatgttttcctctagatatcatgaggaaatgcttacccattattatccttttccttttttcgcacatgctaacgcacgtgcacacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttttcc