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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCAATTCTGCTATCAAGAAAATTTAGCCTTGCTTGGAGATGAGGTTTACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgttgtgctgcagcgctggtaaactgatattttgcctcagttgttaatgtgaactaataatatatacttttctacacgagaag

Basic information

species Glycine max
transcript GLYMA02G04320.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20497753|gb|BQ272683.1|BQ272683
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|15204829|gb|BI427597.1|BI427597
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|17518503|gb|BM187545.1|BM187545
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|13125648|gb|BG316218.1|BG316218
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|23064228|gb|BU579001.1|BU579001
EST:     TGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: TGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|20498019|gb|BQ272949.1|BQ272949
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|14999822|gb|BI320636.1|BI320636
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCCCCCATAAACAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|23064069|gb|BU578842.1|BU578842
EST:     AGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: AGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|22525213|gb|BU084024.1|BU084024
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|120534088|gb|EH262221.1|EH262221
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|22522320|gb|BU081131.1|BU081131
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|120529217|gb|EH257351.1|EH257351
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|31561742|gb|CD487580.1|CD487580
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|10844815|gb|BF068017.1|BF068017
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|20813120|gb|BQ297598.1|BQ297598
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|13482372|gb|BG511715.1|BG511715
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|120530295|gb|EH258429.1|EH258429
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|22525567|gb|BU084378.1|BU084378
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|13481734|gb|BG511077.1|BG511077
EST:     ACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAA-TGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|37996526|gb|CF808115.1|CF808115
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|23064220|gb|BU578993.1|BU578993
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|13481252|gb|BG510595.1|BG510595
EST:     AGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCACACCTATAAGCAAGGAAGTCCAGCTTATTTC
genomic: AGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGC-CACCTATAAGCAAGGAAGTTCAGCTTATTTC
EST: gi|23735380|gb|BU765969.1|BU765969
EST:     TCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: TCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|17519349|gb|BM188391.1|BM188391
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|20448749|gb|BQ252873.1|BQ252873
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|7326948|gb|AW620746.1|AW620746
EST:     ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG                         GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|17400294|gb|BM177076.1|BM177076
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|6566266|gb|AW233945.1|AW233945
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: gi|20812986|gb|BQ297464.1|BQ297464
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCAATTCTGCTATCAAGAAAATTTAGCCTTGCTTGGAGATGAGGTTTACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgttgtgctgcagcgctggtaaactgatattttgcctcagttgttaatgtgaactaataatatatacttttctacacgagaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG