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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTCACGGCAGAAAATAAGTTTGAGGCCTTGgtttgtcactaaaactttattttcccttgcatttaatttttcatatgctatttcattacattacgttacatcagttctttcattaaactcgcttcatatgtagcaaaacattggcttgcagtgtcagtgtgctcatattctccttttgcag

Basic information

species Glycine max
transcript GLYMA02G01930.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 9
GTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTCACGGCAGAAAATAAGTTTGAGGCCTTGgtttgtcactaaaactttattttcccttgcatttaatttttcatatgctatttcattacattacgttacatcagttctttcattaaactcgc-ttcatatgtagcaaaacattggcttgcagtgtcagtgtgctcatattctccttttgcag
 ||||||||||| ||||| || ||||| |||||||||||||| || || ||||| || ||||| || |||||||| || |||||| || ||        ||| |     |   | |||||| | |     |||        | |  |||||    |||      ||  |   || ||  |   ||                                                 
ATTTGATGCCAAAATAGCTGCTGCAGTGGCTGAGGAAACAAACCTACCCTTTGTGACAGCAGAGAACAAGTTTGAAGCTTTGgttagtaacagtgcacatatataaatcttactctaatttgttactgcatatagacaaggaatttgttact---gtttagcagttggaagggcatttttgaata-------------------------------------------------

upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 9
lower sequence: AT5G50950.3 (Arabidopsis thaliana), 5'ss of exon 8
GTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTCACGGCAGAAAATAAGTTTGAGGCCTTGgtttgtcactaaa--acttt-attttcccttgcatttaatttt--tcatatgctatttcattacatt--acgttacatcagttctttcattaaactcgcttcatatgtagcaaaacattggcttgcagtgtcagtgtgctcatattctccttttgcag
||||||||  ||||| || || ||||||||||| ||||||||  |||| || ||||| |||||||| |||||||| ||  ||||| | | |||||  ||||| ||  ||       |  || |||  || ||   | || || |   ||  |  | | |  || |  |||   |   | | |  ||||| |  ||    |||  ||     | |  |||                     
GTTTGATGTAAAGATCGCTGCTGCAGTAGCTGAAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTGgttagcctctaaataactttcatcatcatcaatgtccaaatttagtcttagcgtcttccactgggttctaaatcaaacaagatgcttctgaatggttgatgtatatgaaataagttgttgagttattacgcctttgtag-------------------

upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 9
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTCACGGCAGAAAATAAGTTTGAGGCCTTGgtttgtcactaa--aactttattttcccttg-catttaatttttcatatgctatttcattacattacgttacatcagttctttcattaaactcgcttcatatgtagcaaaacattggcttgcagtgtcagtgtgctcatattctccttttgcag
||||||||  |||||||| || ||||||||||| ||||||||  |||| |||||||| |||||||| |||||||| ||  ||||      | ||  | || |||| |   ||| ||   ||    |     ||| |  |  |         || |  || | || |  |||||  |    ||  || || ||  |||    |||  | ||                          
GTTTGATGTAAAGATAGCTGCTGCAGTAGCTGAAGAAACAAACTTGCCATTTGTCACTGCAGAAAACAAGTTTGAAGCTCTGgtagcctccaaactacctctattatttattgacacgaaacccattcctagctctgcctctggtgccaactagacaagatgttcc--taaacg-gtgaaatcagttgctaa--attattctgctttttccag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394627|gb|EV264498.1|EV264498
EST:     AGGAAACAAATCTGCCTTTTGTCACGGCAGAAAATAAGTTTGAGGCCTTG                         GCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCCCTTAACACTGTTGTG
genomic: AGGAAACAAATCTGCCTTTTGTCACGGCAGAAAATAAGTTTGAGGCCTTGgtttgtcact ... ccttttgcagGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCCCTTAACACTGTTGTG