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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGATGCCAAAATAGCAGCAGCAGTAGCTGAGGAAACCAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGgtttgttactataacccccccccccccccccccctctctttatatttaatgcgtcatgttatttcattacatcagcttttttcattgaaattgcttcacatgcagcaaaacattggcttgcagtgtgttaatattctccttttgcag

Basic information

species Glycine max
transcript GLYMA02G01920.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 9
GTTTGATGCCAAAATAGCAGCAGCAGTAGCTGAGGAAACCAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGgtttgttactataacccccccccccccccccccctctctttatatttaatgc-gtcatgttatttcattacatcagcttttttcattgaaattgcttcacatgcagcaaaacattggcttgcagtgtgttaatattctccttttgcag
 ||||||||||||||||| || ||||| ||||||||||| || || || ||||| || ||||| || |||||||| || |||||| || ||  |  | |          |   | ||   ||  || |  ||   | || |  ||||  |    |       ||  |  |  |||  |  | |                                               
ATTTGATGCCAAAATAGCTGCTGCAGTGGCTGAGGAAACAAACCTACCCTTTGTGACAGCAGAGAACAAGTTTGAAGCTTTGgttagtaacagtg-cacatatataaatcttactctaatttgttactgcatatagacaaggaatttgttactgtttagcagttggaagggcatttttgaata-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279870|gb|BI943659.1|BI943659
EST:     AGGAAACCAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG                         GCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCCCTTAACACTATTGCT
genomic: AGGAAACCAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGgtttgttact ... ccttttgcagGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCCCTTAACACTATTGCG