1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaatgttatatttgcctgtccatttatgtgatatttcattgtgatattcatatatatgaaccttcattatcag
species | Glycine max |
transcript | GLYMA02G01220.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTAEST: gi|17023669|gb|BM094703.1|BM094703
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTAEST: gi|16349285|gb|BI974880.1|BI974880
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTAEST: gi|207820675|gb|GD792526.1|GD792526
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTAEST: gi|207797958|gb|GD768522.1|GD768522
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: TACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTAEST: gi|13791263|gb|BG653854.1|BG653854
genomic: TACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTTTTTTGGCTAEST: gi|207749260|gb|GD720090.1|GD720090
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTAEST: gi|208218102|gb|GE016120.1|GE016120
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: TACTACCGAGTTCTAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTAEST: gi|13562753|gb|BG550973.1|BG550973
genomic: TAC-ACCGAGTTC-AAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTAEST: gi|9901022|gb|BE609988.1|BE609988
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: TTACACGGAGTT-AAATTTTCACAGAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTAEST: gi|7590534|gb|AW706284.1|AW706284
genomic: TTACACCGAGTTCAAATTTCCACA-AATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAG ATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaat ... tcattatcagATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGgtattgtaatgttatatttgcctgtccatttatgtgatatttcattgtgatattcatatatatgaaccttcattatcag
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