1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaattctaaagatttatagtttgctctgtaaaatccaggcatttcatggctgttttgtgtccttgcattgaatgatctgcacatgagtttatt...
species | Glycine max |
transcript | GLYMA02G01220.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACEST: gi|193403349|gb|FK367699.1|FK367699
genomic: GGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCGGCTTGTTGAAATTATCAAG GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACEST: gi|207824407|gb|GD793767.1|GD793767
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGAAACCCCGACAAGGGAAGAAATCAAGTEST: gi|193398127|gb|FK361249.1|FK361249
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAA-CCCCGACAAGGGAAGAAATCAAGT
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCGGCTTGTTGAAATTATCAAG GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACEST: gi|15286220|gb|BI470111.1|BI470111
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACEST: gi|10254836|gb|BE822602.1|BE822602
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACEST: gi|298195934|gb|HO044325.1|HO044325
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACEST: gi|7590534|gb|AW706284.1|AW706284
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
EST: AGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACEST: gi|9259545|gb|BE347700.1|BE347700
genomic: AGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACEST: gi|37994511|gb|CF806247.1|CF806247
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaa ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataaattctaaagatttatagtttgctctgtaaaatccaggcatttcatggctgttttgtgtccttgcattgaatgatctgcacatgagtttatt
- - - - - - - - - AGTGGA
- - - - - - - - - GTGGAG
- - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - TCAGCT