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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattcttcctctattatattatctgtgctctagtacatacattaccctatcgctattattttctttatttctatttgcttatttatggatacag

Basic information

species Glycine max
transcript GLYMA02G00750.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G00750.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0130g00310.t01 (Vitis vinifera), 5'ss of exon 9
GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattcttcct-ctattatattatctgtgctctagtacatacat------taccctatcgctattattttctttatttctatttgcttatttatggatacag-------------------
|| |||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||  | ||||| |  |||||||  ||  || |  |  | ||   |   |||| || |||  | ||       | || | | || | || || ||  ||| | |||   ||||| ||  | |                     
GATCTGGTGGAAAACAATCCCCTTATTGCGGTTGAAGTTCTCATTAAGTTGATTAATTCAGCTGAAATTGAGGAgtatgtttttgtcatgttgatttacctttcttgctttattactgaaatgataagcatcccagcactttaatctttttcttttttttttctgtatttttgctttcctttcttttttgtcaatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193718862|gb|FK655240.1|FK655240
EST:     TTGATAAATTCTCCAGAAANAGCAGA                         ATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: TTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|13562521|gb|BG550741.1|BG550741
EST:     ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|209723773|gb|BW665682.1|BW665682
EST:     ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: gi|193568019|gb|FK524356.1|FK524356
EST:     ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA                         ATACTTTACAGTACTTGTCAATACGGACATGAGTCTACATTCAATGGAAGT
genomic: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT