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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcctgctgtgtacttaatttttggcatgcatgtatgtatatatatatatatatatatatatatcatgacacataaagctgaccctgtattttggtaaatacctaccttgtgtgcgtag

Basic information

species Glycine max
transcript GLYMA01G45070.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G45070.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 9
TGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcctgctgtgtacttaatttttggcatgcatgtatgtatatatatatatatatatatatatatcatgacacataaagctgaccctgtattttggtaaatacc-taccttgtgtgcgtag
|||||||| || || || || || |||||||||||  ||||||| ||||| ||||| || ||||| ||||||||||||||| |||||||||| ||||||||||||   ||  | |    |   || |    ||  |   |||   |||||| |  |  | |  |   ||  || ||||    |   || | ||    | | ||  ||              
TGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAATgtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctgaaactgt-cactgtgcgac-taaactaaagtgtgaacttcaaaataaactgtag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203975|gb|BE330199.1|BE330199
EST:     TAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT                         AGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACA
genomic: TAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcct ... gtgtgcgtagAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACA
EST: gi|15203170|gb|BI425938.1|BI425938
EST:     TAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT                         AGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACA
genomic: TAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATgtaagttcct ... gtgtgcgtagAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACA