1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTGCATCCATTTGTTAAAAAAGCCACACTGGGAAGACCTATTCTGTCTGCTGATCCTTCAGAAGCAAAACCTGATTTTGTGAATGCTATGAGATCTCTGgtaaaagcaattagaagtgttcgtgatactgtttcactgtagttcttagtttcttactcttgtttttccaaaatttgtgaagtatatgaaataagtaaaa...
species | Glycine max |
transcript | GLYMA01G42960.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGATCCTTCAGAAGCAAAACCTGGTTTTGTGAATGCTATGAGATCTCTG GCCATTGGACCTGCAAAACATAATTTAGCCTTAGTTTCAGAAGCAGCTGGTEST: gi|6912867|gb|AW394397.1|AW394397
genomic: CTGATCCTTCAGAAGCAAAACCTGATTTTGTGAATGCTATGAGATCTCTGgtaaaagcaa ... attgttttagGCCATTGGACCTGCAAAACATAATTTAGCCTTAGTTTCAGAAGCAGCTGGT
EST: CTGATCCTTCAGAAGCAAAACCTGATTTTGTGAATGCTATGAGATCTCTG GCCATTGGACCTGCAAAACATAATTTAGCCTTAGTTTCAGAAGCAGCTGGTEST: gi|7147189|gb|AW509111.1|AW509111
genomic: CTGATCCTTCAGAAGCAAAACCTGATTTTGTGAATGCTATGAGATCTCTGgtaaaagcaa ... attgttttagGCCATTGGACCTGCAAAACATAATTTAGCCTTAGTTTCAGAAGCAGCTGGT
EST: CTGATCCTTCAGAAGCAAAACCTGATTTTGTGAATGCTATGAGATCTCTG GCCATTGGACCTGCAAAACATAATTAAGCCTTAGTTTCAAAAGCAGCTGGT
genomic: CTGATCCTTCAGAAGCAAAACCTGATTTTGTGAATGCTATGAGATCTCTGgtaaaagcaa ... attgttttagGCCATTGGACCTGCAAAACATAATTTAGCCTTAGTTTCAGAAGCAGCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCATCCATTTGTTAAAAAAGCCACACTGGGAAGACCTATTCTGTCTGCTGATCCTTCAGAAGCAAAACCTGATTTTGTGAATGCTATGAGATCTCTGgtaaaagcaattagaagtgttcgtgatactgtttcactgtagttcttagtttcttactcttgtttttccaaaatttgtgaagtatatgaaataagtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC