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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATAACACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAGgtaattatttaagcgtatattatgcttgtgctgtgctttatgttaaccatgatacaattattcttgaattctgtttcttttcagtagaagccatttaatg...

Basic information

species Glycine max
transcript GLYMA01G42940.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395947|gb|EV265824.1|EV265824
EST:     TAACACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAG                         GTTGGTACAGTACTTCTTGGCTGTGCCTTCATTTACGACATCTTTTGGGTA
genomic: TAACACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAGgtaattattt ... cctgaattagGTTGGTACAGTACTTCTTGGCTGTGCCTTCATTTACGACATCTTTTGGGTA
EST: gi|21601179|gb|BQ611510.1|BQ611510
EST:     TAACACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAG                         GTTGGTACAGTACTTCTTGGCTGTGCCTTCATTTACGACATCTTTTGGGTA
genomic: TAACACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAGgtaattattt ... cctgaattagGTTGGTACAGTACTTCTTGGCTGTGCCTTCATTTACGACATCTTTTGGGTA
EST: gi|151407819|gb|EV277634.1|EV277634
EST:     TAACACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAG                         GTTGGTACAGTACTTCTTGGCTGTGCCTTCATTTACGACATCTTTTGGGTA
genomic: TAACACTGATAATCACAGTTCTACAGATTGTACATGTACCAAATCTCAAGgtaattattt ... cctgaattagGTTGGTACAGTACTTCTTGGCTGTGCCTTCATTTACGACATCTTTTGGGTA